Protein Concepts Dictionary

Tableau information

Concept source:  d3mmtc_  amino acid (a.a.) range (SER0)(GLY172)

nSSEs in this Concept: 14

String of secondary struct.elems. (SSEs) defining this concept: HEHHHEHHEEEHEH

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	    (SER0)   (VAL13) H1
	   (GLY16)   (ALA22) E2
	   (SER25)   (GLY37) H3
	   (THR41)   (PHE53) H4
	   (ALA55)   (SER61) H5
	   (SER64)   (PHE69) E6
	   (PHE69)   (GLN75) H7
	   (THR84)   (ALA90) H8
	   (VAL93)   (ASP99) E9
	  (GLY101)  (ALA107) E10
	  (GLN110)  (GLY116) E11
	  (LEU120)  (GLY131) H12
	  (ARG133)  (ALA145) E13
	  (THR150)  (GLY172) H14

Orientation angles° of SSE-pairs; those in contact shown in bold font
          H1                                                                                                
E2       90.5°   E2                                                                                         
H3        7.6°  -87.4°   H3                                                                                  
H4       84.1°  170.1°   86.3°   H4                                                                           
H5      129.2° -127.5°  135.8°  -61.9°   H5                                                                    
E6      -99.7°  -16.1°  -98.2°  173.7°  112.0°   E6                                                             
H7       93.2°   99.3°  -86.9°  -72.8° -109.3° -111.7°   H7                                                      
H8       82.0°  172.5°   85.1°    8.0°  -58.9° -167.2°  -80.7°   H8                                               
E9      -99.8°  -47.3°  102.6°  141.8°   88.1°  -32.9° -143.8°  134.4°   E9                                        
E10    -108.1°  -79.0°  114.2°  110.5°   58.5°   63.7°  158.6° -103.7°   32.0°   E10                                
E11     124.9°   96.3° -118.4°  -80.2°  -87.3°  101.4°  -31.7°  -87.7°  124.1°  126.9°   E11                         
H12      64.5°  115.6°  -60.1°  -54.5° -112.6°  131.6°   34.1°  -60.6°  158.9° -162.6°   63.4°   H12                  
E13     -63.9°  -80.3°   70.1°  104.5°   88.1°  -73.1°  157.0°   96.7°  -47.7°  -44.2° -170.8°  125.8°   E13           
H14     112.5°  104.5° -106.7°  -70.3°  -91.3°  112.3°  -20.3°  -78.1°  138.0°  139.1°   14.2°  -49.5° -174.3°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±4.1°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d3bv4a_ :     (THR8)  (SER159)   [view usage] : c.1.10.1 |TIM beta/alpha-barrel |Aldolase |Class I aldolase |Fructose-1,6-bisphosphate aldolase |Rabbit (Oryctolagus cuniculus), muscle isozyme [TaxId: 9986]
 d2qapa_ :    (GLU22)  (GLY191)   [view usage] : c.1.10.0 |TIM beta/alpha-barrel |Aldolase |automated matches |automated matches |Trypanosome (Leishmania mexicana) [TaxId: 5665]
 d1qo5e_ :     (THR8)  (GLN179)   [view usage] : c.1.10.1 |TIM beta/alpha-barrel |Aldolase |Class I aldolase |Fructose-1,6-bisphosphate aldolase |Human (Homo sapiens), liver isozyme [TaxId: 9606]
 d3mmta_ :    (GLY-1)  (GLY172)   [view usage] : c.1.10.0 |TIM beta/alpha-barrel |Aldolase |automated matches |automated matches |Bartonella henselae [TaxId: 38323]
 d3mmtc_ :     (SER0)  (GLY172)   [view usage] : c.1.10.0 |TIM beta/alpha-barrel |Aldolase |automated matches |automated matches |Bartonella henselae [TaxId: 38323]
 d1alda_ :     (THR8)  (GLY181)   [view usage] : c.1.10.1 |TIM beta/alpha-barrel |Aldolase |Class I aldolase |Fructose-1,6-bisphosphate aldolase |Human (Homo sapiens), muscle isozyme [TaxId: 9606]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
   c.1