Protein Concepts Dictionary

Tableau information

Concept source:  d3dyoa3  amino acid (a.a.) range (PRO434)(GLN625)

nSSEs in this Concept: 14

String of secondary struct.elems. (SSEs) defining this concept: HEHHEEHEHEEEHH

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	  (PRO434)  (ARG446) H1
	  (ILE454)  (LEU458) E2
	  (ALA466)  (SER477) H3
	  (SER477)  (ARG482) H4
	  (ARG482)  (GLY488) E5
	  (ASP497)  (TYR503) E6
	  (ILE520)  (LEU526) H7
	  (PRO532)  (GLU537) E8
	  (ALA550)  (GLN558) H9
	  (GLN563)  (ASP569) E10
	  (GLN573)  (TYR578) E11
	  (TRP585)  (GLY589) E12
	  (ASP598)  (ASN604) H13
	  (ALA616)  (GLN625) H14

Orientation angles° of SSE-pairs; those in contact shown in bold font
          H1                                                                                                
E2      167.2°   E2                                                                                         
H3      -25.4°  150.3°   H3                                                                                  
H4       53.4° -132.8°  -76.8°   H4                                                                           
E5      144.9°  -38.2°  170.2°   94.6°   E5                                                                    
E6      107.2°  -71.9°  131.6°   65.5°  -38.8°   E6                                                             
H7     -100.5°   82.7°  -76.7° -130.5°  112.7°  151.5°   H7                                                      
E8      107.8°  -64.0°  122.8°   89.1°  -51.5°  -33.7°  140.3°   E8                                               
H9      -71.4°  114.0°  -51.5° -100.7°  136.1°  160.2°  -32.0° -166.1°   H9                                        
E10     107.1°  -63.6°  119.7°   93.7°  -55.6°  -40.0°  135.9°   -6.3° -159.7°   E10                                
E11      88.5°  -82.3°  103.3°   80.7°  -70.4°  -43.4°  146.3°   19.7° -152.6°   18.7°   E11                         
E12    -138.0°   48.9°  115.9° -134.9°  -73.4° -112.1°   39.4° -113.0°   66.6° -112.2°  130.7°   E12                  
H13     -26.4°  159.0°  -19.2°   65.4°  157.0°  128.9°  -76.3° -134.0°  -45.6° -132.9° -114.6°  111.9°   H13           
H14     -63.6°  124.4°  -49.2°  -85.6°  135.7°  146.2°  -45.9° -171.4°  -15.4° -168.7° -151.8°   75.5°  -37.3°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±4.1°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d3czja3 :   (THR441)  (GLN625)   [view usage] : c.1.8.0 |TIM beta/alpha-barrel |(Trans)glycosidases |automated matches |automated matches |Escherichia coli K-12 [TaxId: 83333]
 d3iaqa3 :   (PRO434)  (GLN625)   [view usage] : c.1.8.3 |TIM beta/alpha-barrel |(Trans)glycosidases |beta-glycanases |beta-Galactosidase, domain 3 |Escherichia coli [TaxId: 562]
 d3dyma3 :   (ASP429)  (GLN625)   [view usage] : c.1.8.0 |TIM beta/alpha-barrel |(Trans)glycosidases |automated matches |automated matches |Escherichia coli K-12 [TaxId: 83333]
 d3dyoa3 :   (PRO434)  (GLN625)   [view usage] : c.1.8.0 |TIM beta/alpha-barrel |(Trans)glycosidases |automated matches |automated matches |Escherichia coli K-12 [TaxId: 83333]
 d3i3ba3 :   (PRO434)  (GLN625)   [view usage] : c.1.8.3 |TIM beta/alpha-barrel |(Trans)glycosidases |beta-glycanases |beta-Galactosidase, domain 3 |Escherichia coli [TaxId: 562]
 d3iapa3 :   (THR441)  (GLN625)   [view usage] : c.1.8.3 |TIM beta/alpha-barrel |(Trans)glycosidases |beta-glycanases |beta-Galactosidase, domain 3 |Escherichia coli [TaxId: 562]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
   c.1