Protein Concepts Dictionary

Tableau information

Concept source:  d1t3za_  amino acid (a.a.) range (SER57)(ARG220)

nSSEs in this Concept: 14

String of secondary struct.elems. (SSEs) defining this concept: HEHEHHEHHHHEHH

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	   (SER57)   (PHE63) H1
	   (ASN66)   (LYS75) E2
	   (GLU78)   (ALA90) H3
	   (ASP91)   (PHE97) E4
	  (GLY100)  (GLY106) H5
	  (THR108)  (LEU115) H6
	  (ARG118)  (VAL124) E7
	  (HIS131)  (LEU136) H8
	  (ASN141)  (GLY147) H9
	  (GLY148)  (THR153) H10
	  (ALA166)  (GLY191) H11
	  (GLN194)  (ALA199) E12
	  (ALA199)  (ARG209) H13
	  (ARG209)  (ARG220) H14

Orientation angles° of SSE-pairs; those in contact shown in bold font
          H1                                                                                                
E2      110.2°   E2                                                                                         
H3       38.7° -143.1°   H3                                                                                  
E4      153.7°  -63.6° -132.0°   E4                                                                           
H5      -79.7°   53.9° -116.0°  110.6°   H5                                                                    
H6      -48.3°  117.4°  -62.0°  158.0°   63.8°   H6                                                             
E7      145.5°  -85.7°  112.2°  -22.4°  131.7°  149.4°   E7                                                      
H8     -124.7°  -85.5°  126.1°   81.3°  -67.8°   77.0°   85.8°   H8                                               
H9       63.0°   93.2°  -58.0°   91.2°  117.6° -110.4°   86.4°  172.1°   H9                                        
H10     116.5° -125.2°   77.9°  -61.9° -158.0°  114.5°  -39.6°   90.3°  -84.1°   H10                                
H11     -24.4°   91.1°  -62.5°  152.0°  -55.5°  -44.2°  163.7° -110.0°   77.8°  140.3°   H11                         
E12     143.6°  -90.0°  108.9°  -26.6° -135.1°  145.6°   -4.3°   85.5°   86.7°  -35.3°  164.5°   E12                  
H13      74.8° -143.6°   37.5°  -95.5°  153.5°  -93.3°  -74.7°  122.4°  -55.8°   42.5°   99.1°  -71.4°   H13           
H14     -92.9°  -80.1°  -82.5°   61.2° -125.6° -140.2°   58.9°  142.5°  -29.9°   70.9° -104.9°   60.2°  -63.5°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±4.7°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d4hl6a_ :    (SER61)  (ALA221)   [view usage] : c.123.1.0 |CoA-transferase family III (CaiB/BaiF) |CoA-transferase family III (CaiB/BaiF) |automated matches |automated matches |Escherichia coli [TaxId: 83333]
 d1xk7a_ :    (TYR58)  (ASN217)   [view usage] : c.123.1.1 |CoA-transferase family III (CaiB/BaiF) |CoA-transferase family III (CaiB/BaiF) |CoA-transferase family III (CaiB/BaiF) |Crotonobetainyl-CoA:carnitine CoA-transferase, CaiB |Escherichia coli [TaxId: 562]
 d1xa3a_ :    (TYR58)  (ASN217)   [view usage] : c.123.1.1 |CoA-transferase family III (CaiB/BaiF) |CoA-transferase family III (CaiB/BaiF) |CoA-transferase family III (CaiB/BaiF) |Crotonobetainyl-CoA:carnitine CoA-transferase, CaiB |Escherichia coli [TaxId: 562]
 d1q6ya_ :    (ALA59)  (GLY224)   [view usage] : c.123.1.1 |CoA-transferase family III (CaiB/BaiF) |CoA-transferase family III (CaiB/BaiF) |CoA-transferase family III (CaiB/BaiF) |Hypothetical protein YfdW |Escherichia coli [TaxId: 562]
 d4hl6b_ :    (SER61)  (ALA221)   [view usage] : c.123.1.0 |CoA-transferase family III (CaiB/BaiF) |CoA-transferase family III (CaiB/BaiF) |automated matches |automated matches |Escherichia coli [TaxId: 83333]
 d3ubmc_ :    (LEU64)  (ARG239)   [view usage] : c.123.1.0 |CoA-transferase family III (CaiB/BaiF) |CoA-transferase family III (CaiB/BaiF) |automated matches |automated matches |Acetobacter aceti [TaxId: 435]
 d1xvua1 :    (TYR58)  (ASN217)   [view usage] : c.123.1.1 |CoA-transferase family III (CaiB/BaiF) |CoA-transferase family III (CaiB/BaiF) |CoA-transferase family III (CaiB/BaiF) |Crotonobetainyl-CoA:carnitine CoA-transferase, CaiB |Escherichia coli [TaxId: 562]
 d3ubmb_ :    (LEU64)  (GLY241)   [view usage] : c.123.1.0 |CoA-transferase family III (CaiB/BaiF) |CoA-transferase family III (CaiB/BaiF) |automated matches |automated matches |Acetobacter aceti [TaxId: 435]
 d2vjoa_ :    (LEU58)  (ARG220)   [view usage] : c.123.1.1 |CoA-transferase family III (CaiB/BaiF) |CoA-transferase family III (CaiB/BaiF) |CoA-transferase family III (CaiB/BaiF) |automated matches |Oxalobacter formigenes [TaxId: 847]
 d1pt5a_ :    (LEU58)  (LYS220)   [view usage] : c.123.1.1 |CoA-transferase family III (CaiB/BaiF) |CoA-transferase family III (CaiB/BaiF) |CoA-transferase family III (CaiB/BaiF) |Hypothetical protein YfdW |Escherichia coli [TaxId: 562]
 d1t4ca_ :    (SER57)  (ARG220)   [view usage] : c.123.1.1 |CoA-transferase family III (CaiB/BaiF) |CoA-transferase family III (CaiB/BaiF) |CoA-transferase family III (CaiB/BaiF) |Formyl-CoA transferase |Oxalobacter formigenes [TaxId: 847]
 d1pt8a_ :    (ALA57)  (LYS220)   [view usage] : c.123.1.1 |CoA-transferase family III (CaiB/BaiF) |CoA-transferase family III (CaiB/BaiF) |CoA-transferase family III (CaiB/BaiF) |Hypothetical protein YfdW |Escherichia coli [TaxId: 562]
 d3ubma_ :    (LEU64)  (ARG239)   [view usage] : c.123.1.0 |CoA-transferase family III (CaiB/BaiF) |CoA-transferase family III (CaiB/BaiF) |automated matches |automated matches |Acetobacter aceti [TaxId: 435]
 d1xk6a1 :    (TYR58)  (ASN217)   [view usage] : c.123.1.1 |CoA-transferase family III (CaiB/BaiF) |CoA-transferase family III (CaiB/BaiF) |CoA-transferase family III (CaiB/BaiF) |Crotonobetainyl-CoA:carnitine CoA-transferase, CaiB |Escherichia coli [TaxId: 562]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
 c.123