Protein Concepts Dictionary

Tableau information

Concept source:  d1fnpl_  amino acid (a.a.) range (GLY18)(ILE275)

nSSEs in this Concept: 14

String of secondary struct.elems. (SSEs) defining this concept: HEEHHHHHHHHHHH

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	   (GLY18)   (ASP23) H1
	   (ASP23)   (GLY27) E2
	   (PRO28)   (PHE33) E3
	   (PHE33)   (GLY57) H4
	   (GLY84)  (LEU111) H5
	  (ILE117)  (VAL132) H6
	  (PHE134)  (GLY140) H7
	  (GLY149)  (GLY165) H8
	  (ASN170)  (ASN199) H9
	  (PHE209)  (LEU219) H10
	  (GLY225)  (THR251) H11
	  (THR251)  (PHE256) H12
	  (GLN258)  (LEU269) H13
	  (LEU269)  (ILE275) H14

Orientation angles° of SSE-pairs; those in contact shown in bold font
          H1                                                                                                
E2       13.3°   E2                                                                                         
E3      154.4°  148.7°   E3                                                                                  
H4       69.6°   58.7°  -91.2°   H4                                                                           
H5      -88.7°  -98.7°  111.8° -157.0°   H5                                                                    
H6       97.9°   86.9°  -63.8°   28.4° -170.9°   H6                                                             
H7      128.1°  115.8°  -40.1°   59.1° -140.3°  -31.5°   H7                                                      
H8     -121.2° -110.1°   70.7°   83.6° -102.5°   68.7°   48.9°   H8                                               
H9      -53.4°  -65.4°  139.7° -122.7°   37.5° -150.5°  177.5° -128.9°   H9                                        
H10      94.2°   81.4°  -86.7°   53.0° -124.6°   48.8°  -49.1°  -33.3°  130.1°   H10                                
H11     109.5°   99.5°  -50.3°   40.9° -161.8°   14.0°  -24.4°   70.1° -158.1°   57.7°   H11                         
H12    -114.6° -101.8°   69.3°   66.2° -119.9°   51.5°   37.3°   17.8°  140.9°  -20.4°  -54.8°   H12                  
H13    -117.9° -113.6°   84.8°  114.3°  -68.8°  102.4°   79.4°  -33.7°  -98.2°  -61.3°  102.7°   51.2°   H13           
H14      52.9°   39.6° -118.6°  -35.3°  124.4°  -56.8°  -79.2°  -74.9°  101.4°   42.8°  -70.8°  -63.0°   93.4°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±4.1°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d1fnql_ :    (GLY18)  (ILE275)   [view usage] : f.26.1.1 |Bacterial photosystem II reaction centre, L and M subunits |Bacterial photosystem II reaction centre, L and M subunits |Bacterial photosystem II reaction centre, L and M subunits |L (light) subunit |Rhodobacter sphaeroides [TaxId: 1063]
 d3v3yl_ :    (GLY18)  (ILE275)   [view usage] : f.26.1.1 |Bacterial photosystem II reaction centre, L and M subunits |Bacterial photosystem II reaction centre, L and M subunits |Bacterial photosystem II reaction centre, L and M subunits |L (light) subunit |Rhodobacter sphaeroides [TaxId: 1063]
 d1yf6l_ :    (GLY18)  (ILE275)   [view usage] : f.26.1.1 |Bacterial photosystem II reaction centre, L and M subunits |Bacterial photosystem II reaction centre, L and M subunits |Bacterial photosystem II reaction centre, L and M subunits |L (light) subunit |Rhodobacter sphaeroides [TaxId: 1063]
 d1jh0l_ :    (GLY18)  (ILE275)   [view usage] : f.26.1.1 |Bacterial photosystem II reaction centre, L and M subunits |Bacterial photosystem II reaction centre, L and M subunits |Bacterial photosystem II reaction centre, L and M subunits |L (light) subunit |Rhodobacter sphaeroides [TaxId: 1063]
 d3zuwl_ :    (GLY18)  (LEU269)   [view usage] : f.26.1.1 |Bacterial photosystem II reaction centre, L and M subunits |Bacterial photosystem II reaction centre, L and M subunits |Bacterial photosystem II reaction centre, L and M subunits |automated matches |Rhodobacter sphaeroides [TaxId: 1063]
 d1rvjl_ :    (GLY18)  (ILE275)   [view usage] : f.26.1.1 |Bacterial photosystem II reaction centre, L and M subunits |Bacterial photosystem II reaction centre, L and M subunits |Bacterial photosystem II reaction centre, L and M subunits |L (light) subunit |Rhodobacter sphaeroides [TaxId: 1063]
 d1f6nl_ :    (GLY18)  (ILE275)   [view usage] : f.26.1.1 |Bacterial photosystem II reaction centre, L and M subunits |Bacterial photosystem II reaction centre, L and M subunits |Bacterial photosystem II reaction centre, L and M subunits |L (light) subunit |Rhodobacter sphaeroides [TaxId: 1063]
 d2gmrl1 :    (GLY18)  (LEU269)   [view usage] : f.26.1.1 |Bacterial photosystem II reaction centre, L and M subunits |Bacterial photosystem II reaction centre, L and M subunits |Bacterial photosystem II reaction centre, L and M subunits |L (light) subunit |Rhodobacter sphaeroides [TaxId: 1063]
 d1pssl_ :    (GLY18)  (LYS268)   [view usage] : f.26.1.1 |Bacterial photosystem II reaction centre, L and M subunits |Bacterial photosystem II reaction centre, L and M subunits |Bacterial photosystem II reaction centre, L and M subunits |L (light) subunit |Rhodobacter sphaeroides [TaxId: 1063]
 d4h9ll_ :    (GLY18)  (LEU269)   [view usage] : f.26.1.1 |Bacterial photosystem II reaction centre, L and M subunits |Bacterial photosystem II reaction centre, L and M subunits |Bacterial photosystem II reaction centre, L and M subunits |L (light) subunit |Rhodobacter sphaeroides [TaxId: 1063]
 d1fnpl_ :    (GLY18)  (ILE275)   [view usage] : f.26.1.1 |Bacterial photosystem II reaction centre, L and M subunits |Bacterial photosystem II reaction centre, L and M subunits |Bacterial photosystem II reaction centre, L and M subunits |L (light) subunit |Rhodobacter sphaeroides [TaxId: 1063]
 d2wx5l_ :    (GLY18)  (ILE275)   [view usage] : f.26.1.1 |Bacterial photosystem II reaction centre, L and M subunits |Bacterial photosystem II reaction centre, L and M subunits |Bacterial photosystem II reaction centre, L and M subunits |automated matches |Rhodobacter sphaeroides [TaxId: 1063]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
  f.26