Protein Concepts Dictionary

Tableau information

Concept source:  d1f5la_  amino acid (a.a.) range (PHE59)(HIS241)

nSSEs in this Concept: 14

String of secondary struct.elems. (SSEs) defining this concept: HEEEEEEEEHEEEH

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	   (PHE59)   (PRO60) H1
	   (ASP63)   (GLY69) E2
	   (GLY79)   (GLU84) E3
	   (GLU86)   (HIS91) E4
	   (TYR94)   (THR97) E5
	   (LEU97)  (ASN101) E6
	  (ASP102)  (SER110) E7
	  (THR134)  (GLY140) E8
	  (GLN154)  (SER164) E9
	  (SER164)  (GLN170) H10
	  (LYS179)  (ASP185) E11
	  (GLY196)  (SER202) E12
	  (ASP223)  (THR229) E13
	  (LEU235)  (HIS241) H14

Orientation angles° of SSE-pairs; those in contact shown in bold font
          H1                                                                                                
E2     -135.8°   E2                                                                                         
E3      -42.9°  160.7°   E3                                                                                  
E4     -113.3°   97.5°  -73.1°   E4                                                                           
E5     -130.7°   92.2°  -96.6°   58.1°   E5                                                                    
E6       56.4°  -83.3°   84.9°  112.4°  169.0°   E6                                                             
E7       65.4°  -79.4°  107.4°  171.4° -129.7°   59.4°   E7                                                      
E8       55.3°  122.4°  -74.3° -132.8°  -93.3°   97.6°   54.2°   E8                                               
E9     -104.1°  -89.6°   74.5°   26.0°   83.0°  -86.9° -145.4°  148.0°   E9                                        
H10     -89.8°  130.5°  -63.9°  -73.5°   41.1° -145.7°  114.7°  -61.9°   97.4°   H10                                
E11     143.6°   53.0° -143.2°  -96.8°  -50.8°  130.5°   87.7°  -89.5°  111.6°   79.3°   E11                         
E12    -130.2°  -28.1°  133.1°   76.8°   97.0°  -74.4°  -97.5°  148.7°  -63.0°  137.5°   74.7°   E12                  
E13      33.8° -102.9°   70.2°  122.3° -164.5°   23.9°  -51.6°   75.6° -100.5° -123.4°  138.0°  -98.1°   E13           
H14      36.4° -107.1°   78.0°  149.6° -136.1°   54.9°  -29.4°   43.0° -134.5°  102.2° -112.2° -118.6°   35.2°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±4.1°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d3mwiu_ :    (PHE59)  (LYS243)   [view usage] : b.47.1.2 |Trypsin-like serine proteases |Trypsin-like serine proteases |Eukaryotic proteases |Urokinase-type plasminogen activator (LMW U-PA), catalytic domain |Human (Homo sapiens) [TaxId: 9606]
 d1ejna_ :    (PHE59)  (HIS241)   [view usage] : b.47.1.2 |Trypsin-like serine proteases |Trypsin-like serine proteases |Eukaryotic proteases |Urokinase-type plasminogen activator (LMW U-PA), catalytic domain |Human (Homo sapiens) [TaxId: 9606]
 d2o8wa_ :    (PHE59)  (HIS241)   [view usage] : b.47.1.2 |Trypsin-like serine proteases |Trypsin-like serine proteases |Eukaryotic proteases |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d1f5la_ :    (PHE59)  (HIS241)   [view usage] : b.47.1.2 |Trypsin-like serine proteases |Trypsin-like serine proteases |Eukaryotic proteases |Urokinase-type plasminogen activator (LMW U-PA), catalytic domain |Human (Homo sapiens) [TaxId: 9606]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
  b.47