Protein Concepts Dictionary

Tableau information

Concept source:  d4a2da3  amino acid (a.a.) range (PRO370)(LEU505)

nSSEs in this Concept: 14

String of secondary struct.elems. (SSEs) defining this concept: HEEEEEEEEEHEHH

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	  (PRO370)  (SER377) H1
	  (SER390)  (PRO395) E2
	  (ASP399)  (PRO405) E3
	  (PRO414)  (HIS420) E4
	  (HIS422)  (ARG428) E5
	  (SER433)  (TYR437) E6
	  (ASN439)  (ASP444) E7
	  (ASP444)  (ALA450) E8
	  (GLY452)  (ARG458) E9
	  (GLY465)  (CYS471) E10
	  (ASP474)  (GLY480) H11
	  (PHE481)  (GLU487) E12
	  (ASP488)  (ASN496) H13
	  (GLN500)  (LEU505) H14

Orientation angles° of SSE-pairs; those in contact shown in bold font
          H1                                                                                                
E2      -51.9°   E2                                                                                         
E3      140.6°  153.7°   E3                                                                                  
E4      -40.1°  -49.1°  157.2°   E4                                                                           
E5      113.8°   98.5°  -56.3°  145.4°   E5                                                                    
E6      -44.4°  -33.7°  170.6°  -16.7°  132.1°   E6                                                             
E7      -92.3° -127.2°   79.0°  -78.2°  133.7°  -93.5°   E7                                                      
E8      114.8°  127.4°  -33.7°  154.1°   33.9° -155.5° -101.1°   E8                                               
E9      -48.2°  -40.6°  163.2°  -13.3°  139.1°    7.4°  -86.9° -162.0°   E9                                        
E10     149.2°  133.2°  -21.4°  170.6°  -41.4°  160.7°   98.1°  -34.8°  160.5°   E10                                
H11      40.1°  -91.3°  101.9°  -69.4°  105.0°  -80.7°  -70.5°   85.8°  -81.7°  117.7°   H11                         
E12     -34.6°  -23.4°  172.6°  -27.6°  118.0°  -16.7° -105.3°  139.0°  -23.9°  156.3°  -74.3°   E12                  
H13     -97.9°   86.0° -109.4°   58.4° -142.9°   61.4°  -58.9° -143.0°   54.7°  112.3° -111.7°   78.0°   H13           
H14    -111.9° -153.7°   29.5° -135.2°  -67.4° -151.0°   67.6°  -33.7° -148.3°   48.3°  -72.5° -146.5° -118.9°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±4.1°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d1v10a3 :   (PRO356)  (ASN477)   [view usage] : b.6.1.3 |Cupredoxin-like |Cupredoxins |Multidomain cupredoxins |Laccase |Rigidoporus lignosus [TaxId: 219653]
 d1hfua3 :   (THR354)  (SER499)   [view usage] : b.6.1.3 |Cupredoxin-like |Cupredoxins |Multidomain cupredoxins |Laccase |Inky cap fungus (Coprinus cinereus) [TaxId: 5346]
 d1gyca3 :   (PRO350)  (LEU487)   [view usage] : b.6.1.3 |Cupredoxin-like |Cupredoxins |Multidomain cupredoxins |Laccase |Trametes versicolor, laccase 2 [TaxId: 5325]
 d2hrga3 :   (PRO349)  (ASN475)   [view usage] : b.6.1.0 |Cupredoxin-like |Cupredoxins |automated matches |automated matches |Funalia trogii [TaxId: 76130]
 d4a2da3 :   (PRO370)  (LEU505)   [view usage] : b.6.1.0 |Cupredoxin-like |Cupredoxins |automated matches |automated matches |Coriolopsis gallica [TaxId: 76126]
 d2xyba3 :   (VAL351)  (LEU485)   [view usage] : b.6.1.0 |Cupredoxin-like |Cupredoxins |automated matches |automated matches |Pycnoporus cinnabarinus [TaxId: 5643]
 d3t6va3 :   (PRO354)  (LEU487)   [view usage] : b.6.1.0 |Cupredoxin-like |Cupredoxins |automated matches |automated matches |Steccherinum ochraceum [TaxId: 92696]
 d3fpxa3 :   (PRO350)  (LEU487)   [view usage] : b.6.1.0 |Cupredoxin-like |Cupredoxins |automated matches |automated matches |Trametes hirsuta [TaxId: 5327]
 d2qt6a3 :   (PRO349)  (LEU493)   [view usage] : b.6.1.0 |Cupredoxin-like |Cupredoxins |automated matches |automated matches |Lentinus tigrinus [TaxId: 5365]
 d1kyaa3 :   (PRO350)  (LEU487)   [view usage] : b.6.1.3 |Cupredoxin-like |Cupredoxins |Multidomain cupredoxins |Laccase |Trametes versicolor, laccase 1 [TaxId: 5325]
 d1a65a3 :   (THR354)  (SER499)   [view usage] : b.6.1.3 |Cupredoxin-like |Cupredoxins |Multidomain cupredoxins |Laccase |Inky cap fungus (Coprinus cinereus) [TaxId: 5346]
 d3pxla3 :   (PRO350)  (LEU487)   [view usage] : b.6.1.0 |Cupredoxin-like |Cupredoxins |automated matches |automated matches |Trametes hirsuta [TaxId: 5327]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
   b.6