Protein Concepts Dictionary

Tableau information

Concept source:  d2jawa_  amino acid (a.a.) range (LEU36)(THR195)

nSSEs in this Concept: 14

String of secondary struct.elems. (SSEs) defining this concept: EHHHHHHEHHEHEE

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	   (LEU36)   (MET42) E1
	   (MET42)   (ALA47) H2
	   (ASP48)   (PRO62) H3
	   (TRP76)   (ARG85) H4
	   (LEU88)   (SER98) H5
	  (ASN100)  (LEU105) H6
	  (ALA111)  (LEU121) H7
	  (ASN123)  (LYS134) E8
	  (CYS139)  (TYR150) H9
	  (GLY152)  (GLN158) H10
	  (GLN158)  (THR162) E11
	  (ASP164)  (SER169) H12
	  (ASP171)  (ASP175) E13
	  (GLU190)  (THR195) E14

Orientation angles° of SSE-pairs; those in contact shown in bold font
          E1                                                                                                
H2      -85.3°   H2                                                                                         
H3       -7.4°   89.4°   H3                                                                                  
H4      -31.0°  -93.0°  -36.4°   H4                                                                           
H5      116.7°   64.7°  113.4°  145.5°   H5                                                                    
H6      123.5°   47.3°  130.0°  110.9°  -74.2°   H6                                                             
H7     -158.8°  106.4° -151.4°  157.2°  -56.8°  -75.9°   H7                                                      
E8      -30.1° -115.4°  -26.8°  -36.5° -128.6°  147.3° -134.7°   E8                                               
H9      118.6°   33.3°  122.6°  120.4°   52.7°  -24.4°  -75.1°  148.7°   H9                                        
H10    -103.5°  154.9° -102.2°  -83.9° -127.5°  110.8°   73.4°  -75.8°  131.3°   H10                                
E11     -61.0° -139.5°  -60.0°  -46.5° -149.0°  135.0°  112.9°  -34.6°  158.1°  -42.5°   E11                         
H12     158.8°  -79.8°  156.1° -163.6°   42.8°  -53.6°   26.8°  159.1°  -48.5°   96.3°  138.2°   H12                  
E13     -12.7°   77.9°  -20.0°  -24.8°  120.8°  111.8° -171.5°  -38.9°  110.3° -106.0°  -64.6°  157.2°   E13           
E14     -33.4°   55.1°  -39.7°  -40.5°  107.7°   90.3°  161.3°  -62.1°   87.1° -124.1°  -85.8°  134.9°  -23.3°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±4.1°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d2jaoa_ :     (VAL7)  (THR166)   [view usage] : c.108.1.8 |HAD-like |HAD-like |5'(3')-deoxyribonucleotidase (dNT-2) |automated matches |Mouse (Mus musculus) [TaxId: 10090]
 d4l6aa_ :    (GLY33)  (THR195)   [view usage] : c.108.1.8 |HAD-like |HAD-like |5'(3')-deoxyribonucleotidase (dNT-2) |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d2i7db_ :     (VAL5)  (THR164)   [view usage] : c.108.1.8 |HAD-like |HAD-like |5'(3')-deoxyribonucleotidase (dNT-2) |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d2jawa_ :    (LEU36)  (THR195)   [view usage] : c.108.1.8 |HAD-like |HAD-like |5'(3')-deoxyribonucleotidase (dNT-2) |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d1mh9a_ :    (LEU36)  (THR195)   [view usage] : c.108.1.8 |HAD-like |HAD-like |5'(3')-deoxyribonucleotidase (dNT-2) |5'(3')-deoxyribonucleotidase (dNT-2) |Human (Homo sapiens) [TaxId: 9606]
 d1z4ia1 :    (LEU36)  (THR195)   [view usage] : c.108.1.8 |HAD-like |HAD-like |5'(3')-deoxyribonucleotidase (dNT-2) |5'(3')-deoxyribonucleotidase (dNT-2) |Human (Homo sapiens) [TaxId: 9606]
 d1q92a_ :    (LEU36)  (THR195)   [view usage] : c.108.1.8 |HAD-like |HAD-like |5'(3')-deoxyribonucleotidase (dNT-2) |5'(3')-deoxyribonucleotidase (dNT-2) |Human (Homo sapiens) [TaxId: 9606]
 d2i7da_ :     (VAL5)  (THR164)   [view usage] : c.108.1.8 |HAD-like |HAD-like |5'(3')-deoxyribonucleotidase (dNT-2) |automated matches |Human (Homo sapiens) [TaxId: 9606]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
 c.108