Protein Concepts Dictionary

Tableau information

Concept source:  d1ps6a_  amino acid (a.a.) range (GLN5)(LEU162)

nSSEs in this Concept: 14

String of secondary struct.elems. (SSEs) defining this concept: EHEHEEEEHEHHEE

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	    (GLN5)   (THR10) E1
	   (GLY18)   (ALA26) H2
	   (VAL32)   (ALA38) E3
	   (ASP39)   (GLY51) H4
	   (PRO53)   (PRO58) E5
	   (PRO64)   (ALA70) E6
	   (GLY71)   (LEU76) E7
	   (LEU76)   (ALA82) E8
	   (ASN93)  (LEU109) H9
	  (ALA114)  (PRO120) E10
	  (GLY124)  (GLY130) H11
	  (GLY135)  (GLN145) H12
	  (LYS147)  (LEU153) E13
	  (LEU158)  (LEU162) E14

Orientation angles° of SSE-pairs; those in contact shown in bold font
          E1                                                                                                
H2     -153.0°   H2                                                                                         
E3      -24.3° -152.8°   E3                                                                                  
H4       83.4°  -74.9°  104.6°   H4                                                                           
E5     -108.9°   93.9°  -88.1°  167.3°   E5                                                                    
E6       59.6°  -98.0°   81.4°   23.8° -168.1°   E6                                                             
E7      -81.1°  121.9°  -62.1°  163.0°  -28.2° -140.0°   E7                                                      
E8        6.6° -147.1°   24.5°   80.8° -111.8°   57.1°   84.6°   E8                                               
H9     -159.9°   46.4°  147.5° -107.6°   59.8° -129.9°   85.4°  166.3°   H9                                        
E10     -23.6°  131.9°  -46.0°   59.9° -132.5°   36.0° -104.6°  -21.5° -160.3°   E10                                
H11      68.2° -125.5°   44.6°  147.0°  -45.2°  125.4°  -26.6°   69.2° -104.7°   90.7°   H11                         
H12     121.4°  -79.7°   98.7° -154.5°   14.9°  175.1°   42.2°  123.2°  -51.1°  144.7°   54.2°   H12                  
E13     -84.6°   73.2° -105.3°   -2.3°  166.5°  -25.1° -164.8°  -81.7°  107.0°  -61.0° -146.9°  152.9°   E13           
E14      55.0° -148.0°   38.8°  137.1°  -54.6°  113.6°  -26.4°   58.9° -109.7°   78.3°  -28.1°  -68.4°  138.6°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±4.1°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d3lxya_ :     (ASN6)  (LEU163)   [view usage] : c.77.1.3 |Isocitrate/Isopropylmalate dehydrogenase-like |Isocitrate/Isopropylmalate dehydrogenase-like |PdxA-like |automated matches |Yersinia pestis [TaxId: 632]
 d1ptma_ :     (GLN5)  (LEU162)   [view usage] : c.77.1.3 |Isocitrate/Isopropylmalate dehydrogenase-like |Isocitrate/Isopropylmalate dehydrogenase-like |PdxA-like |4-hydroxythreonine-4-phosphate dehydrogenase PdxA |Escherichia coli [TaxId: 562]
 d1ps6a_ :     (GLN5)  (LEU162)   [view usage] : c.77.1.3 |Isocitrate/Isopropylmalate dehydrogenase-like |Isocitrate/Isopropylmalate dehydrogenase-like |PdxA-like |4-hydroxythreonine-4-phosphate dehydrogenase PdxA |Escherichia coli [TaxId: 562]
 d1ps7a_ :     (GLN5)  (LEU162)   [view usage] : c.77.1.3 |Isocitrate/Isopropylmalate dehydrogenase-like |Isocitrate/Isopropylmalate dehydrogenase-like |PdxA-like |4-hydroxythreonine-4-phosphate dehydrogenase PdxA |Escherichia coli [TaxId: 562]
 d1yxoa_ :  (SER1002) (LEU1161)   [view usage] : c.77.1.3 |Isocitrate/Isopropylmalate dehydrogenase-like |Isocitrate/Isopropylmalate dehydrogenase-like |PdxA-like |automated matches |Pseudomonas aeruginosa [TaxId: 287]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
  c.77