Protein Concepts Dictionary

Tableau information

Concept source:  d3v9ja_  amino acid (a.a.) range (PHE387)(LYS552)

nSSEs in this Concept: 14

String of secondary struct.elems. (SSEs) defining this concept: EHEEEHEHEHEHHE

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	  (PHE387)  (ASP393) E1
	  (ASP393)  (SER409) H2
	  (SER412)  (ALA417) E3
	  (GLY419)  (SER424) E4
	  (TYR427)  (LYS437) E5
	  (ASP438)  (GLU446) H6
	  (PRO451)  (VAL457) E7
	  (TYR463)  (SER472) H8
	  (LEU478)  (ALA484) E9
	  (LYS487)  (LEU497) H10
	  (GLY502)  (ASN507) E11
	  (VAL514)  (PRO519) H12
	  (PRO535)  (TRP541) H13
	  (TRP541)  (LYS552) E14

Orientation angles° of SSE-pairs; those in contact shown in bold font
          E1                                                                                                
H2     -105.8°   H2                                                                                         
E3     -124.2° -121.5°   E3                                                                                  
E4      -65.3° -146.3°  -59.0°   E4                                                                           
E5       99.2°   30.2°  136.5° -163.9°   E5                                                                    
H6       72.5°  171.7°  -56.3°   25.6° -157.3°   H6                                                             
E7      108.8°   26.8°  126.8° -171.3°   -9.9° -161.5°   E7                                                      
H8       38.2°  142.6°  -87.8°  -32.1°  134.9°  -34.5°  144.8°   H8                                               
E9     -154.2°  -48.7°   79.7°  136.8°  -57.2°  133.3°  -47.3°  167.4°   E9                                        
H10       9.4°  114.9° -117.5°  -59.3°  105.9°  -63.9°  115.7°  -30.0°  162.6°   H10                                
E11    -158.7°  -63.4°   59.0°  112.6°  -80.1°  115.3°  -70.4°  144.6°  -24.8°  164.3°   E11                         
H12     -70.9°   53.5°  162.7° -135.7°   30.3° -131.2°   40.2° -104.7°   87.2°  -76.4°  110.5°   H12                  
H13      16.9°  122.4° -111.0°  -53.9°  112.0°  -56.6°  121.8°  -23.2°  169.2°   -7.6° -164.6°   82.0°   H13           
E14      87.6° -119.2°   93.2°   93.6°  -89.8°   69.0°  -92.5°  -77.4°  101.5°  -81.2°  113.6°  -78.3°   77.0°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±4.1°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d4lh1b_ :   (PHE387)  (GLU549)   [view usage] : c.82.1.0 |ALDH-like |ALDH-like |automated matches |automated matches |Mouse (Mus musculus) [TaxId: 10090]
 d4e3xa_ :   (PHE387)  (GLU549)   [view usage] : c.82.1.0 |ALDH-like |ALDH-like |automated matches |automated matches |Mouse (Mus musculus) [TaxId: 10090]
 d3v9ka_ :   (PHE387)  (GLU549)   [view usage] : c.82.1.0 |ALDH-like |ALDH-like |automated matches |automated matches |Mouse (Mus musculus) [TaxId: 10090]
 d3v9jb_ :   (PHE387)  (LYS552)   [view usage] : c.82.1.0 |ALDH-like |ALDH-like |automated matches |automated matches |Mouse (Mus musculus) [TaxId: 10090]
 d3qanb_ :   (TYR358)  (ALA516)   [view usage] : c.82.1.0 |ALDH-like |ALDH-like |automated matches |automated matches |Bacillus halodurans [TaxId: 86665]
 d3v9ja_ :   (PHE387)  (LYS552)   [view usage] : c.82.1.0 |ALDH-like |ALDH-like |automated matches |automated matches |Mouse (Mus musculus) [TaxId: 10090]
 d4lgza_ :   (PHE387)  (LYS552)   [view usage] : c.82.1.0 |ALDH-like |ALDH-like |automated matches |automated matches |Mouse (Mus musculus) [TaxId: 10090]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
  c.82