Protein Concepts Dictionary

Tableau information

Concept source:  d2zo1b_  amino acid (a.a.) range (GLY432)(GLY606)

nSSEs in this Concept: 14

String of secondary struct.elems. (SSEs) defining this concept: EHEEEHEEHEEEEH

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	  (GLY432)  (ARG436) E1
	  (ARG438)  (SER444) H2
	  (TYR463)  (GLY469) E3
	  (ASP473)  (ASN477) E4
	  (PHE481)  (GLY485) E5
	  (ASN509)  (LEU515) H6
	  (LYS524)  (ASP530) E7
	  (GLY534)  (MET543) E8
	  (MET543)  (HIS548) H9
	  (GLY556)  (GLY561) E10
	  (GLY561)  (VAL565) E11
	  (VAL566)  (PRO570) E12
	  (VAL579)  (THR589) E13
	  (THR595)  (GLY606) H14

Orientation angles° of SSE-pairs; those in contact shown in bold font
          E1                                                                                                
H2      129.2°   H2                                                                                         
E3      -64.7°  165.3°   E3                                                                                  
E4     -137.4°   67.7°  -98.8°   E4                                                                           
E5       48.0°  -91.6°  102.8° -155.6°   E5                                                                    
H6      169.5°   50.6° -114.8°   32.5° -138.4°   H6                                                             
E7      138.7°   53.1° -114.1°  -15.9°  140.0°   30.9°   E7                                                      
E8      -49.8°  150.4°  -31.1°  -95.1°   97.5° -123.9° -106.0°   E8                                               
H9     -106.2° -117.4°   55.1°  -92.1°  109.5°  -80.3° -104.1°  -86.0°   H9                                        
E10     152.2°  -33.8°  136.2°   66.0° -104.3°   34.9°   58.4°  157.9°   83.5°   E10                                
E11     -96.9°  -86.4°   97.4°  124.8°  -63.5°  -93.6°  123.1°  122.9°   57.0°  -66.0°   E11                         
E12     -43.7° -129.5°   62.8°  160.1°  -44.2° -146.4° -175.6°   73.0°   71.6° -121.3°  -55.7°   E12                  
E13     126.9°   58.1° -111.0°  -20.2°  136.3°   42.7°   11.8°  -97.5° -112.3°   68.9°  134.5° -169.7°   E13           
H14     -70.3°   73.1° -112.1°   82.3°  -79.1°  101.3°   73.2°  -81.0° -165.3°  106.3° -136.7° -110.6°   63.1°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±4.1°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d3clzd_ :   (GLY427)  (GLY602)   [view usage] : b.122.1.12 |PUA domain-like |PUA domain-like |SRA domain-like |E3 ubiquitin-protein ligase UHRF1 |Human (Homo sapiens) [TaxId: 9606]
 d2zkdb_ :   (GLY432)  (GLY606)   [view usage] : b.122.1.12 |PUA domain-like |PUA domain-like |SRA domain-like |E3 ubiquitin-protein ligase UHRF1 |Mouse (Mus musculus) [TaxId: 10090]
 d2zo1b_ :   (GLY432)  (GLY606)   [view usage] : b.122.1.12 |PUA domain-like |PUA domain-like |SRA domain-like |E3 ubiquitin-protein ligase UHRF1 |Mouse (Mus musculus) [TaxId: 10090]
 d2zkea_ :   (THR433)  (GLY606)   [view usage] : b.122.1.12 |PUA domain-like |PUA domain-like |SRA domain-like |E3 ubiquitin-protein ligase UHRF1 |Mouse (Mus musculus) [TaxId: 10090]
 d3f8jb_ :   (GLY432)  (GLY606)   [view usage] : b.122.1.12 |PUA domain-like |PUA domain-like |SRA domain-like |E3 ubiquitin-protein ligase UHRF1 |Mouse (Mus musculus) [TaxId: 10090]
 d2zkda1 :   (GLY432)  (GLY606)   [view usage] : b.122.1.12 |PUA domain-like |PUA domain-like |SRA domain-like |E3 ubiquitin-protein ligase UHRF1 |Mouse (Mus musculus) [TaxId: 10090]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
 b.122