Protein Concepts Dictionary

Tableau information

Concept source:  d1z5oa_  amino acid (a.a.) range (SER-1)(PRO166)

nSSEs in this Concept: 14

String of secondary struct.elems. (SSEs) defining this concept: EHEEEHEEEEHEEH

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	   (SER-1)    (ILE6) E1
	   (THR14)   (ILE20) H2
	   (ASN22)   (LEU28) E3
	   (CYS31)   (GLY36) E4
	   (GLU42)   (SER48) E5
	   (GLY51)   (LYS67) H6
	   (VAL70)   (SER76) E7
	   (ASP88)   (SER92) E8
	   (GLU94)   (ASP99) E9
	  (ALA117)  (ASP122) E10
	  (ASP123)  (ASN137) H11
	  (ASN139)  (GLY143) E12
	  (GLY143)  (ASP149) E13
	  (VAL156)  (PRO166) H14

Orientation angles° of SSE-pairs; those in contact shown in bold font
          E1                                                                                                
H2     -153.3°   H2                                                                                         
E3      -54.4°  129.6°   E3                                                                                  
E4      145.1°   37.3°  160.3°   E4                                                                           
E5      -17.3° -149.4°  -37.9°  161.8°   E5                                                                    
H6      166.5°   16.2°  122.1°  -40.3°  154.0°   H6                                                             
E7      -30.0°  131.7°  -84.1°  115.6°  -46.2°  147.5°   E7                                                      
E8      111.4°  -83.4°   58.0° -102.3°   95.8°  -69.4°  141.4°   E8                                               
E9       28.9° -135.0°  -35.4°  161.1°   14.7° -140.0°   53.2°  -91.9°   E9                                        
E10    -137.7°   34.7°  164.3°   13.5° -151.7°   43.4° -107.7° -110.9°  147.6°   E10                                
H11     -78.1°   91.1° -132.4°   67.3°  -94.5°  103.2°  -48.3° -167.8°   99.7°   60.3°   H11                         
E12      88.5° -105.1°   36.3° -124.5°   73.4°  -92.1°  118.5°  -22.9°   71.5° -133.8° -163.4°   E12                  
E13      56.9° -104.5°  -47.2°  137.2°   45.2° -110.5°   71.7°  -85.7°  -30.6°  125.6°  106.3°  -73.5°   E13           
H14     134.4°   72.3°  102.7°  -61.8°  130.9°  -57.6° -141.1°   53.7°  137.0°  -75.0° -114.2°   68.8°  139.4°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±5.0°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d4l0ma_ :     (MSE1)  (PHE172)   [view usage] : c.56.2.0 |Phosphorylase/hydrolase-like |Purine and uridine phosphorylases |automated matches |automated matches |Borrelia burgdorferi [TaxId: 224326]
 d4kn5a_ :     (SER0)  (PHE166)   [view usage] : c.56.2.0 |Phosphorylase/hydrolase-like |Purine and uridine phosphorylases |automated matches |automated matches |Weissella paramesenteroides [TaxId: 585506]
 d3bl6a_ :    (ALA-1)  (PHE164)   [view usage] : c.56.2.1 |Phosphorylase/hydrolase-like |Purine and uridine phosphorylases |Purine and uridine phosphorylases |5'-Methylthioadenosine/S-Adenosylhomocysteine nucleosidase |Staphylococcus aureus [TaxId: 1280]
 d4f1wa_ :     (MET1)  (PHE165)   [view usage] : c.56.2.1 |Phosphorylase/hydrolase-like |Purine and uridine phosphorylases |Purine and uridine phosphorylases |automated matches |Salmonella enterica [TaxId: 904139]
 d4f3ca_ :     (MET1)  (PRO166)   [view usage] : c.56.2.1 |Phosphorylase/hydrolase-like |Purine and uridine phosphorylases |Purine and uridine phosphorylases |automated matches |Salmonella enterica [TaxId: 904139]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
  c.56