Protein Concepts Dictionary

Tableau information

Concept source:  d2df5a_  amino acid (a.a.) range (GLN35)(SER212)

nSSEs in this Concept: 14

String of secondary struct.elems. (SSEs) defining this concept: EHEEEEEEHEHEHH

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	   (GLN35)   (VAL40) E1
	   (GLY46)   (GLU58) H2
	   (ASP62)   (GLY72) E3
	   (ILE76)   (ILE81) E4
	   (ASN84)   (ILE90) E5
	   (GLY95)  (ASP100) E6
	  (ASP100)  (VAL104) E7
	  (THR109)  (LEU115) E8
	  (ILE117)  (GLY128) H9
	  (ILE129)  (ASN135) E10
	  (LEU141)  (ALA154) H11
	  (GLY163)  (PRO168) E12
	  (ILE170)  (LYS180) H13
	  (TYR189)  (SER212) H14

Orientation angles° of SSE-pairs; those in contact shown in bold font
          E1                                                                                                
H2      166.3°   H2                                                                                         
E3      -36.1°  150.2°   E3                                                                                  
E4       87.3°  -94.1°  113.3°   E4                                                                           
E5      -45.7°  130.1°   32.2°  132.7°   E5                                                                    
E6     -106.6°  -84.0° -105.3°   47.7° -137.4°   E6                                                             
E7      146.8°  -22.9°  168.3°  -77.8°  136.9°   84.9°   E7                                                      
E8     -133.5°   45.0° -106.1° -138.8°  -87.7° -110.8°   64.1°   E8                                               
H9      -89.0°   91.4°  -60.1° -171.3°  -44.9° -126.4°  109.3°   46.4°   H9                                        
E10      70.5° -111.6°   96.0°  -17.5°  116.3°   52.6°  -94.8° -155.9° -155.8°   E10                                
H11     142.0°  -37.5° -164.7°  -56.6° -163.0°   59.5°  -26.3°   82.3°  128.4°  -74.1°   H11                         
E12     -54.3°  126.4°  -26.9°  139.4°   17.2° -125.3°  141.4°  -81.4°  -35.1°  122.0°  163.5°   E12                  
H13      20.3° -172.1°  -23.4°   90.5°   48.0°  -94.4°  164.8° -129.5°  -83.3°   73.1° -146.4°  -49.0°   H13           
H14     136.2°  -47.6°  150.0°  -49.0° -177.6°   44.8°  -40.7°   90.3°  133.7°  -65.7°  -14.7°  163.2°  134.4°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±4.1°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d1iofa_ :    (GLN35)  (LEU207)   [view usage] : c.56.4.1 |Phosphorylase/hydrolase-like |Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase) |Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase) |Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase) |Pyrococcus furiosus [TaxId: 2261]
 d2df5a_ :    (GLN35)  (SER212)   [view usage] : c.56.4.1 |Phosphorylase/hydrolase-like |Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase) |Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase) |automated matches |Pyrococcus furiosus [TaxId: 2261]
 d3giub_ :    (THR34)  (ILE198)   [view usage] : c.56.4.0 |Phosphorylase/hydrolase-like |Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase) |automated matches |automated matches |Staphylococcus aureus [TaxId: 93062]
 d1z8xa_ :    (GLN35)  (GLU206)   [view usage] : c.56.4.1 |Phosphorylase/hydrolase-like |Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase) |Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase) |Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase) |Pyrococcus furiosus [TaxId: 2261]
 d1x12a_ :    (GLN35)  (GLY181)   [view usage] : c.56.4.1 |Phosphorylase/hydrolase-like |Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase) |Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase) |Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase) |Pyrococcus furiosus [TaxId: 2261]
 d2ebja_ :    (PRO33)  (GLU190)   [view usage] : c.56.4.0 |Phosphorylase/hydrolase-like |Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase) |automated matches |automated matches |Thermus thermophilus HB8 [TaxId: 300852]
 d1x10a_ :    (GLN35)  (LEU207)   [view usage] : c.56.4.1 |Phosphorylase/hydrolase-like |Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase) |Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase) |automated matches |Pyrococcus furiosus [TaxId: 2261]
 d1z8wa_ :    (GLN35)  (LEU207)   [view usage] : c.56.4.1 |Phosphorylase/hydrolase-like |Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase) |Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase) |Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase) |Pyrococcus furiosus [TaxId: 2261]
 d1z8ta_ :    (GLN35)  (GLU206)   [view usage] : c.56.4.1 |Phosphorylase/hydrolase-like |Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase) |Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase) |Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase) |Pyrococcus furiosus [TaxId: 2261]
 d1iu8a_ :    (GLU32)  (ARG206)   [view usage] : c.56.4.1 |Phosphorylase/hydrolase-like |Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase) |Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase) |Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase) |Pyrococcus horikoshii [TaxId: 53953]
 d1ioia_ :    (GLN35)  (GLU206)   [view usage] : c.56.4.1 |Phosphorylase/hydrolase-like |Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase) |Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase) |Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase) |Pyrococcus furiosus [TaxId: 2261]
 d3giua_ :    (THR34)  (ILE198)   [view usage] : c.56.4.0 |Phosphorylase/hydrolase-like |Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase) |automated matches |automated matches |Staphylococcus aureus [TaxId: 93062]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
  c.56