Protein Concepts Dictionary

Tableau information

Concept source:  d3ieja_  amino acid (a.a.) range (ASP3)(ALA199)

nSSEs in this Concept: 14

String of secondary struct.elems. (SSEs) defining this concept: EEHHHEEHEHEEEE

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	    (ASP3)    (TRP7) E1
	   (GLU15)   (SER21) E2
	   (ALA24)   (GLY43) H3
	   (ALA50)   (ASP55) H4
	   (MET71)   (LYS82) H5
	   (LYS82)   (ASP87) E6
	  (ALA107)  (PRO117) E7
	  (GLU121)  (LYS131) H8
	  (GLY132)  (HIS142) E9
	  (HIS142)  (TYR148) H10
	  (HIS164)  (VAL169) E11
	  (VAL169)  (ASP173) E12
	  (LEU181)  (SER185) E13
	  (GLY194)  (ALA199) E14

Orientation angles° of SSE-pairs; those in contact shown in bold font
          E1                                                                                                
E2       76.4°   E2                                                                                         
H3       91.7°  161.7°   H3                                                                                  
H4       76.4°  -31.4°  132.6°   H4                                                                           
H5       46.3°  109.1°  -53.5°   89.0°   H5                                                                    
E6      -80.8°   91.4° -100.5°  121.9°  111.6°   E6                                                             
E7     -152.1°  -76.2°  113.5°  -77.6° -143.0°  104.7°   E7                                                      
H8       53.4°  129.6°   41.7°  122.8°   37.6°  -78.9°  154.1°   H8                                               
E9      -96.2°  -36.9°  161.0°  -66.2°  140.5°   64.1°  -63.7° -136.1°   E9                                        
H10     -65.2° -134.5°   46.1° -140.9°  -59.5°  -60.3°  141.5°  -21.9° -123.2°   H10                                
E11     105.9° -177.7°   19.4°  148.1°  -72.5°  -89.5°  101.5°  -52.7°  142.4°   47.7°   E11                         
E12    -152.7° -104.1°   92.9° -118.4° -146.4°   71.8°   43.1° -118.7°   72.3°   99.8°   74.2°   E12                  
E13      27.4°   49.4°  119.0°  -57.1°   69.8°   79.4° -125.6°   80.2°  -70.9°  -88.4°  132.9°  140.4°   E13           
E14     158.5°   92.4°  -94.1°   84.5° -124.8° -118.2°   21.0° -135.7°   84.7°  131.4°  -85.2°  -47.5°  140.1°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±4.1°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d3ieja_ :     (ASP3)  (ALA199)   [view usage] : d.3.1.1 |Cysteine proteinases |Cysteine proteinases |Papain-like |(Pro)cathepsin S |Human (Homo sapiens) [TaxId: 9606]
 d2f1ga_ :     (ASP3)  (ASN201)   [view usage] : d.3.1.1 |Cysteine proteinases |Cysteine proteinases |Papain-like |(Pro)cathepsin S |Human (Homo sapiens) [TaxId: 9606]
 d3mpeb_ :     (ASP3)  (ALA199)   [view usage] : d.3.1.1 |Cysteine proteinases |Cysteine proteinases |Papain-like |(Pro)cathepsin S |Human (Homo sapiens) [TaxId: 9606]
 d3kwna_ :     (ASP3)  (ALA199)   [view usage] : d.3.1.1 |Cysteine proteinases |Cysteine proteinases |Papain-like |(Pro)cathepsin S |Human (Homo sapiens) [TaxId: 9606]
 d2g6da1 :     (ASP3)  (ALA190)   [view usage] : d.3.1.1 |Cysteine proteinases |Cysteine proteinases |Papain-like |(Pro)cathepsin S |Human (Homo sapiens) [TaxId: 9606]
 d2xu3a_ :     (ARG3)  (ASP204)   [view usage] : d.3.1.0 |Cysteine proteinases |Cysteine proteinases |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d3iejb_ :     (ASP3)  (ALA199)   [view usage] : d.3.1.1 |Cysteine proteinases |Cysteine proteinases |Papain-like |(Pro)cathepsin S |Human (Homo sapiens) [TaxId: 9606]
 d3mpea_ :     (ASP3)  (ALA199)   [view usage] : d.3.1.1 |Cysteine proteinases |Cysteine proteinases |Papain-like |(Pro)cathepsin S |Human (Homo sapiens) [TaxId: 9606]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
   d.3