Protein Concepts Dictionary

Tableau information

Concept source:  d1jmaa_  amino acid (a.a.) range (PRO54)(HIS183)

nSSEs in this Concept: 14

String of secondary struct.elems. (SSEs) defining this concept: EEHHEEEEHEEHEE

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	   (PRO54)   (ARG64) E1
	   (ARG67)   (ASN72) E2
	   (GLU76)   (ARG82) H3
	   (GLU86)   (PRO92) H4
	   (TYR93)  (MET102) E5
	  (ASN105)  (ILE110) E6
	  (ILE110)  (THR116) E7
	  (PRO128)  (ASN136) E8
	  (ASN136)  (PHE141) H9
	  (PHE141)  (ASP147) E10
	  (PHE151)  (ALA155) E11
	  (ALA157)  (THR163) H12
	  (THR163)  (LYS169) E13
	  (TRP173)  (HIS183) E14

Orientation angles° of SSE-pairs; those in contact shown in bold font
          E1                                                                                                
E2      170.1°   E2                                                                                         
H3      132.4°   39.3°   H3                                                                                  
H4      -53.5°  128.2° -103.3°   H4                                                                           
E5      -55.4°  133.2°  172.2°   80.3°   E5                                                                    
E6       58.8° -113.1°  -73.8°  -55.4°  113.8°   E6                                                             
E7      129.4°  -42.1°   -3.1° -102.5° -175.2°  -71.0°   E7                                                      
E8      -57.8°  131.4°  166.7°   75.7°   -7.9° -114.8°  169.6°   E8                                               
H9       43.0° -127.6°  -99.5°  -82.1°   87.8°  -44.4°  -96.4°  -93.5°   H9                                        
E10     126.6°  -44.2°  -39.1° -135.9°  140.5°  -86.0°  -38.5°  146.8°  -83.6°   E10                                
E11     -18.0°  170.5° -150.0°  -57.9°  -37.6°   76.2°  147.2°  -39.9°   57.5°  138.6°   E11                         
H12    -155.8°   24.0°   58.7°  150.7°  115.0° -127.9°  -60.7°  116.1° -121.5°  -43.8° -147.9°   H12                  
E13     131.2°  -41.3°   -5.6°   98.4°  170.3°  -72.5°   -7.0°  163.0° -101.6°  -44.7°  148.2°  -62.1°   E13           
E14     -28.6°  157.1° -158.5°  -71.8°  -29.2°   86.9°  155.4°  -34.2°   59.4°  132.2°  -14.3° -133.6°  159.0°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±4.4°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d4mywa_ :    (PRO54)  (HIS183)   [view usage] : b.1.1.1 |Immunoglobulin-like beta-sandwich |Immunoglobulin |V set domains (antibody variable domain-like) |automated matches |Human herpesvirus 2 [TaxId: 10313]
 d1jmaa_ :    (PRO54)  (HIS183)   [view usage] : b.1.1.1 |Immunoglobulin-like beta-sandwich |Immunoglobulin |V set domains (antibody variable domain-like) |HSV glycoprotein D |Herpes simplex virus type 1 [TaxId: 10298]
 d1l2ga_ :    (PRO54)  (GLN178)   [view usage] : b.1.1.1 |Immunoglobulin-like beta-sandwich |Immunoglobulin |V set domains (antibody variable domain-like) |HSV glycoprotein D |Herpes simplex virus type 1 [TaxId: 10298]
 d3u82a_ :    (THR56)  (HIS183)   [view usage] : b.1.1.1 |Immunoglobulin-like beta-sandwich |Immunoglobulin |V set domains (antibody variable domain-like) |automated matches |Human herpesvirus 1 [TaxId: 10299]
 d3w9ec_ :    (PRO54)  (HIS183)   [view usage] : b.1.1.1 |Immunoglobulin-like beta-sandwich |Immunoglobulin |V set domains (antibody variable domain-like) |automated matches |Human herpesvirus 2 [TaxId: 10315]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
   b.1