Protein Concepts Dictionary

Tableau information

Concept source:  d3elza_  amino acid (a.a.) range (GLY4)(LYS128)

nSSEs in this Concept: 14

String of secondary struct.elems. (SSEs) defining this concept: EEHHEEEEEEEEEE

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	    (GLY4)    (THR8) E1
	    (GLU9)   (GLY13) E2
	   (PRO16)   (GLY22) H3
	   (ASP25)   (GLY31) H4
	   (PHE34)   (GLY44) E5
	   (ASP46)   (TYR52) E6
	   (HIS57)   (PHE63) E7
	   (ASP70)   (VAL74) E8
	   (GLY76)   (LYS80) E9
	   (LYS80)   (GLU86) E10
	   (LEU90)   (PRO95) E11
	   (TYR97)  (GLU102) E12
	  (LEU108)  (ALA114) E13
	  (GLY119)  (LYS128) E14

Orientation angles° of SSE-pairs; those in contact shown in bold font
          E1                                                                                                
E2      -54.0°   E2                                                                                         
H3      -87.5°   56.7°   H3                                                                                  
H4     -125.8° -154.1°  143.0°   H4                                                                           
E5      153.6°  101.6°   85.5°  -70.9°   E5                                                                    
E6      -41.4°  -91.6°  -95.7°  100.2°  164.9°   E6                                                             
E7      126.3°   78.7°   85.9°  -85.8°  -27.8°  167.2°   E7                                                      
E8      -39.9°  -93.6° -108.5°   92.6°  163.5°   14.0° -156.6°   E8                                               
E9      119.4°   72.1°   84.1°  -91.2°  -34.5°  160.6°   -6.9°  152.1°   E9                                        
E10      99.5°  104.3°  149.8°  -50.1°  -75.2°  108.9°  -66.3°   95.0°   66.9°   E10                                
E11     -51.6°  -23.2°   40.5° -176.4°  110.6°  -79.1°   94.3°  -85.9°   88.6°  126.7°   E11                         
E12     123.5°  146.1° -148.1°   -8.1°  -69.8°  103.1°  -81.3°   94.0°  -86.2°  -42.1° -168.8°   E12                  
E13     -54.7°  -19.5°   40.5° -173.4°  106.2°  -83.9°   89.2°  -90.3°   83.5°  123.7°   -5.1°  165.4°   E13           
E14     125.2°  173.1° -129.8°   19.2°  -77.7°   90.1°  -98.6°   86.4° -104.9°  -68.8°  163.2°  -27.2°  167.3°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±4.5°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d2qo4a_ :     (GLY4)  (LYS123)   [view usage] : b.60.1.2 |Lipocalins |Lipocalins |Fatty acid binding protein-like |automated matches |Zebrafish (Danio rerio) [TaxId: 7955]
 d3elzc_ :     (GLY4)  (LYS129)   [view usage] : b.60.1.0 |Lipocalins |Lipocalins |automated matches |automated matches |Zebrafish (Danio rerio) [TaxId: 7955]
 d2qo6a_ :     (GLY4)  (LYS123)   [view usage] : b.60.1.2 |Lipocalins |Lipocalins |Fatty acid binding protein-like |automated matches |Zebrafish (Danio rerio) [TaxId: 7955]
 d3elxa_ :     (GLY4)  (LYS129)   [view usage] : b.60.1.0 |Lipocalins |Lipocalins |automated matches |automated matches |Zebrafish (Danio rerio) [TaxId: 7955]
 d3elzb_ :     (GLY4)  (LYS128)   [view usage] : b.60.1.0 |Lipocalins |Lipocalins |automated matches |automated matches |Zebrafish (Danio rerio) [TaxId: 7955]
 d2f73a1 :     (GLY5)  (SER124)   [view usage] : b.60.1.2 |Lipocalins |Lipocalins |Fatty acid binding protein-like |Liver fatty acid binding protein |Human (Homo sapiens) [TaxId: 9606]
 d3em0a_ :     (GLY4)  (LYS128)   [view usage] : b.60.1.0 |Lipocalins |Lipocalins |automated matches |automated matches |Zebrafish (Danio rerio) [TaxId: 7955]
 d3em0b_ :     (GLY4)  (VAL132)   [view usage] : b.60.1.0 |Lipocalins |Lipocalins |automated matches |automated matches |Zebrafish (Danio rerio) [TaxId: 7955]
 d3elza_ :     (GLY4)  (LYS128)   [view usage] : b.60.1.0 |Lipocalins |Lipocalins |automated matches |automated matches |Zebrafish (Danio rerio) [TaxId: 7955]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
  b.60