Protein Concepts Dictionary

Tableau information

Concept source:  d3ilwb_  amino acid (a.a.) range (GLY249)(ARG480)

nSSEs in this Concept: 14

String of secondary struct.elems. (SSEs) defining this concept: EEHEEHEHHHHHHH

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	  (GLY249)  (SER263) E1
	  (ARG266)  (PRO275) E2
	  (HIS280)  (GLY294) H3
	  (ASN301)  (SER307) E4
	  (ILE314)  (LYS319) E5
	  (ALA324)  (LYS333) H6
	  (LEU337)  (ALA343) E7
	  (ARG357)  (ALA400) H8
	  (VAL404)  (SER411) H9
	  (VAL414)  (ASP426) H10
	  (GLU429)  (MET438) H11
	  (GLN439)  (ALA444) H12
	  (ALA444)  (ALA470) H13
	  (PRO472)  (ARG480) H14

Orientation angles° of SSE-pairs; those in contact shown in bold font
          E1                                                                                                
E2      149.4°   E2                                                                                         
H3      -73.2°  136.7°   H3                                                                                  
E4      100.5°  -50.1°  172.9°   E4                                                                           
E5      -61.4°  149.0°   18.7°  154.6°   E5                                                                    
H6      145.8°  -35.3°  109.4°  -77.6°  127.6°   H6                                                             
E7      161.3°   16.4°  124.6°  -61.4° -133.6°  -40.3°   E7                                                      
H8      -98.6°   50.7°  166.4°  -14.3° -159.6°   71.1°   65.0°   H8                                               
H9     -105.1°   70.1°   96.5°  -88.1°  113.0°   41.1°   80.2°   74.9°   H9                                        
H10     103.3°  -83.9°  -94.5°   83.7°  -83.5° -110.3°  -71.9°   97.9°  151.4°   H10                                
H11     -31.7°  118.8°  100.4°  -74.5°  -92.1°  120.5°  134.1°  -69.1°  -86.4°  117.3°   H11                         
H12      75.9°  -97.1° -105.4°   69.4°  -87.9° -131.8°  -92.2°  -82.4° -157.2°   34.0°  -83.5°   H12                  
H13     112.8°  -97.0°   46.8°  136.4°   52.2°  -88.8°  -81.4° -145.6°  108.2°  -62.5°  144.2°   91.7°   H13           
H14     -24.2°  150.1°  -60.9°  114.4°  -56.6°  126.2°  165.1°  107.3°  -85.5°  122.7°   39.9°   99.5° -107.1°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±5.3°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d3k9fa_ :   (GLY234)  (ALA475)   [view usage] : e.11.1.1 |Type II DNA topoisomerase C-terminal domain-like |Type II DNA topoisomerase C-terminal domain-like |Type II DNA topoisomerase C-terminal domain-like |DNA Gyrase A |Pneumococcus (Streptococcus pneumoniae) [TaxId: 1313]
 d3ilwa_ :   (VAL256)  (GLY491)   [view usage] : e.11.1.0 |Type II DNA topoisomerase C-terminal domain-like |Type II DNA topoisomerase C-terminal domain-like |automated matches |automated matches |Mycobacterium tuberculosis [TaxId: 1773]
 d3raea_ :   (LYS241)  (ALA475)   [view usage] : e.11.1.0 |Type II DNA topoisomerase C-terminal domain-like |Type II DNA topoisomerase C-terminal domain-like |automated matches |automated matches |Pneumococcus (Streptococcus pneumoniae) [TaxId: 1313]
 d3ilwb_ :   (GLY249)  (ARG480)   [view usage] : e.11.1.0 |Type II DNA topoisomerase C-terminal domain-like |Type II DNA topoisomerase C-terminal domain-like |automated matches |automated matches |Mycobacterium tuberculosis [TaxId: 1773]
 d3ifzb_ :   (GLY249)  (ARG489)   [view usage] : e.11.1.0 |Type II DNA topoisomerase C-terminal domain-like |Type II DNA topoisomerase C-terminal domain-like |automated matches |automated matches |Mycobacterium tuberculosis [TaxId: 83332]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
  e.11