Protein Concepts Dictionary

Tableau information

Concept source:  d3ktza_  amino acid (a.a.) range (VAL52)(ALA232)

nSSEs in this Concept: 14

String of secondary struct.elems. (SSEs) defining this concept: EEEEHEHHHHHHEE

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	   (VAL52)   (ASN58) E1
	   (GLN62)   (ALA67) E2
	   (VAL76)   (ARG81) E3
	   (ASN82)   (PHE87) E4
	   (PRO91)   (GLY97) H5
	  (ILE103)  (PHE109) E6
	  (SER112)  (GLY118) H7
	  (ILE130)  (ALA144) H8
	  (LYS149)  (PHE170) H9
	  (PHE170)  (ASN180) H10
	  (ALA188)  (LYS197) H11
	  (LYS197)  (SER208) H12
	  (SER215)  (GLU221) E13
	  (LYS226)  (ALA232) E14

Orientation angles° of SSE-pairs; those in contact shown in bold font
          E1                                                                                                
E2      164.8°   E2                                                                                         
E3      -47.3°  147.8°   E3                                                                                  
E4      114.1°  -50.7°  159.1°   E4                                                                           
H5      -58.4°  136.8°  -15.5°  172.2°   H5                                                                    
E6       90.6°  -74.2°  137.2°  -23.8°  148.5°   E6                                                             
H7      -37.0°  142.1°  -49.6°  110.4°  -65.2°   93.8°   H7                                                      
H8      -98.6°   89.8°  -68.5°  111.7°  -72.9°  121.3°   65.5°   H8                                               
H9      119.3°  -60.1°  119.2°  -76.5°  105.1°  -84.7° -156.3° -134.5°   H9                                        
H10      13.8° -171.5°  -37.8°  125.9°  -46.4°  102.1°   44.8°  -98.7° -112.3°   H10                                
H11    -152.2°   41.1°  107.3°  -88.1°   99.7° -111.6°  121.3°  -56.0°   80.7° -145.1°   H11                         
H12     141.6°  -40.3°  127.5°  -72.4°  112.0°  -88.6°  177.1° -114.4°   22.5°  133.1°  -58.9°   H12                  
E13      -8.5°  163.2°  -46.1°  113.9°  -59.0°   91.1°   28.5°   91.1° -127.8°  -19.4°  146.2° -150.0°   E13           
E14     144.1°  -47.7°  106.7°  -94.2°   92.0° -114.3°  150.2°  -90.2°   44.3°  130.4°  -40.4°  -28.1°  149.0°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±5.7°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d3ctka1 :    (VAL48)  (ASN232)   [view usage] : d.165.1.1 |Ribosome inactivating proteins (RIP) |Ribosome inactivating proteins (RIP) |Plant cytotoxins |Bouganin |Bougainvillea (Bougainvillea spectabilis) [TaxId: 146096]
 d1rzoc_ :  (ILE1058) (TYR1242)   [view usage] : d.165.1.1 |Ribosome inactivating proteins (RIP) |Ribosome inactivating proteins (RIP) |Plant cytotoxins |Ricin A-chain |Castor bean (Ricinus communis) [TaxId: 3988]
 d3o5wa_ :    (VAL54)  (THR231)   [view usage] : d.165.1.1 |Ribosome inactivating proteins (RIP) |Ribosome inactivating proteins (RIP) |Plant cytotoxins |automated matches |European mistletoe (Viscum album) [TaxId: 3972]
 d3mvga_ :    (ASP48)  (ASP234)   [view usage] : d.165.1.0 |Ribosome inactivating proteins (RIP) |Ribosome inactivating proteins (RIP) |automated matches |automated matches |Iris hollandica [TaxId: 35876]
 d3mvgb_ :    (SER45)  (ASP234)   [view usage] : d.165.1.0 |Ribosome inactivating proteins (RIP) |Ribosome inactivating proteins (RIP) |automated matches |automated matches |Iris hollandica [TaxId: 35876]
 d3mrya_ :    (LEU48)  (ASN227)   [view usage] : d.165.1.1 |Ribosome inactivating proteins (RIP) |Ribosome inactivating proteins (RIP) |Plant cytotoxins |automated matches |Momordica balsamina [TaxId: 3672]
 d1hwoa_ :    (VAL55)  (ASN232)   [view usage] : d.165.1.1 |Ribosome inactivating proteins (RIP) |Ribosome inactivating proteins (RIP) |Plant cytotoxins |Ebulin A-chain |Sambucus ebulus [TaxId: 28503]
 d1d8va_ :    (ILE48)  (ASN225)   [view usage] : d.165.1.1 |Ribosome inactivating proteins (RIP) |Ribosome inactivating proteins (RIP) |Plant cytotoxins |Beta-momorcharin |Bitter gourd (Momordica charantia) [TaxId: 3673]
 d1j1ma_ :    (ARG56)  (ASP244)   [view usage] : d.165.1.1 |Ribosome inactivating proteins (RIP) |Ribosome inactivating proteins (RIP) |Plant cytotoxins |Ricin A-chain |Castor bean (Ricinus communis) [TaxId: 3988]
 d1lp8a_ :    (LYS50)  (GLN238)   [view usage] : d.165.1.1 |Ribosome inactivating proteins (RIP) |Ribosome inactivating proteins (RIP) |Plant cytotoxins |Dianthin 30 |Clove pink (Dianthus caryophyllus) [TaxId: 3570]
 d1hwma_ :    (VAL55)  (ASN232)   [view usage] : d.165.1.1 |Ribosome inactivating proteins (RIP) |Ribosome inactivating proteins (RIP) |Plant cytotoxins |Ebulin A-chain |Sambucus ebulus [TaxId: 28503]
 d1cf5a_ :    (ARG46)  (ASN225)   [view usage] : d.165.1.1 |Ribosome inactivating proteins (RIP) |Ribosome inactivating proteins (RIP) |Plant cytotoxins |Beta-momorcharin |Bitter gourd (Momordica charantia) [TaxId: 3673]
 d1mrja_ :    (ARG46)  (ASN227)   [view usage] : d.165.1.1 |Ribosome inactivating proteins (RIP) |Ribosome inactivating proteins (RIP) |Plant cytotoxins |alpha-Trichosanthin |Mongolian snake gourd (Trichosanthes kirilowii Maxim.) [TaxId: 3677]
 d3my6a_ :    (ARG46)  (ASN227)   [view usage] : d.165.1.1 |Ribosome inactivating proteins (RIP) |Ribosome inactivating proteins (RIP) |Plant cytotoxins |automated matches |Momordica balsamina [TaxId: 3672]
 d1puma_ :    (VAL54)  (THR231)   [view usage] : d.165.1.1 |Ribosome inactivating proteins (RIP) |Ribosome inactivating proteins (RIP) |Plant cytotoxins |Mistletoe lectin I A-chain |European mistletoe (Viscum album) [TaxId: 3972]
 d1hwna_ :    (VAL55)  (ASP231)   [view usage] : d.165.1.1 |Ribosome inactivating proteins (RIP) |Ribosome inactivating proteins (RIP) |Plant cytotoxins |Ebulin A-chain |Sambucus ebulus [TaxId: 28503]
 d1rzoa_ :  (ILE1058) (TYR1242)   [view usage] : d.165.1.1 |Ribosome inactivating proteins (RIP) |Ribosome inactivating proteins (RIP) |Plant cytotoxins |Ricin A-chain |Castor bean (Ricinus communis) [TaxId: 3988]
 d3ej5x_ :    (ARG56)  (TYR243)   [view usage] : d.165.1.1 |Ribosome inactivating proteins (RIP) |Ribosome inactivating proteins (RIP) |Plant cytotoxins |automated matches |Castor bean (Ricinus communis) [TaxId: 3988]
 d1mrga_ :    (LEU48)  (ASN227)   [view usage] : d.165.1.1 |Ribosome inactivating proteins (RIP) |Ribosome inactivating proteins (RIP) |Plant cytotoxins |alpha-Momorcharin (momordin) |Bitter gourd (Momordica charantia) [TaxId: 3673]
 d3ktza_ :    (VAL52)  (ALA232)   [view usage] : d.165.1.0 |Ribosome inactivating proteins (RIP) |Ribosome inactivating proteins (RIP) |automated matches |automated matches |Gelonium multiflorum [TaxId: 3979]
 d1nioa_ :    (ILE49)  (ASP227)   [view usage] : d.165.1.1 |Ribosome inactivating proteins (RIP) |Ribosome inactivating proteins (RIP) |Plant cytotoxins |Beta-luffin |Smooth loofah (Luffa cylindrica) [TaxId: 3670]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
 d.165