Protein Concepts Dictionary

Tableau information

Concept source:  d1i0ra_  amino acid (a.a.) range (TYR14)(LYS140)

nSSEs in this Concept: 14

String of secondary struct.elems. (SSEs) defining this concept: EEEEHEHHEEEEEE

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	   (TYR14)   (SER20) E1
	   (ARG23)   (ILE28) E2
	   (ASN30)   (THR36) E3
	   (VAL40)   (CYS45) E4
	   (ASN50)   (GLY60) H5
	   (GLY60)   (VAL66) E6
	   (MET73)   (ARG78) H7
	   (GLU88)   (VAL93) H8
	   (VAL93)   (LYS99) E9
	  (VAL102)  (GLN107) E10
	  (ALA111)  (ALA115) E11
	  (VAL118)  (GLY124) E12
	  (THR125)  (GLY131) E13
	  (VAL134)  (LYS140) E14

Orientation angles° of SSE-pairs; those in contact shown in bold font
          E1                                                                                                
E2      165.8°   E2                                                                                         
E3       83.4°  -94.0°   E3                                                                                  
E4      -89.1°   86.0°  149.0°   E4                                                                           
H5       54.5° -123.7°  -29.6° -137.7°   H5                                                                    
E6      152.3°  -41.3° -108.8°   91.6° -130.7°   E6                                                             
H7       29.8° -136.0°   78.4°  -80.2°   57.5° -171.7°   H7                                                      
H8     -117.1°   76.0°  -81.5°  128.1°  -90.8°   44.5° -142.9°   H8                                               
E9      -60.8°  112.7°   26.2° -128.0°  -19.1°  135.0°  -52.1° -103.8°   E9                                        
E10     142.1°  -50.2° -120.9°   82.5° -139.1°  -13.1°  160.7°   48.7°  147.1°   E10                                
E11     -41.0°  125.4°   66.7°  -88.1°  -50.9°  166.7°  -14.6° -141.5°  -41.0°  169.7°   E11                         
E12    -107.8°   64.2°  133.7°  -24.4° -141.3°   82.2°  -89.9°  126.1° -124.1°   77.5°  -92.2°   E12                  
E13      86.5° -100.9°  -41.9°  167.4°   45.4°  -86.9°  101.4°  -45.5°   59.0°  -93.8°   96.3°  165.1°   E13           
E14     136.3°  -56.1° -122.5°   82.9°  137.5°  -17.7°  157.8°   46.6°  148.3°   -6.0°  170.7°   80.4°  -92.1°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±8.2°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d1i0ra_ :    (TYR14)  (LYS140)   [view usage] : b.45.1.2 |Split barrel-like |FMN-binding split barrel |NADH:FMN oxidoreductase-like |Ferric reductase |Archaeoglobus fulgidus [TaxId: 2234]
 d3cb0c_ :    (TYR26)  (ALA156)   [view usage] : b.45.1.0 |Split barrel-like |FMN-binding split barrel |automated matches |automated matches |Brucella melitensis [TaxId: 29459]
 d3cb0a_ :    (TYR26)  (ALA156)   [view usage] : b.45.1.0 |Split barrel-like |FMN-binding split barrel |automated matches |automated matches |Brucella melitensis [TaxId: 29459]
 d3bpkb_ :    (PRO26)  (ALA165)   [view usage] : b.45.1.0 |Split barrel-like |FMN-binding split barrel |automated matches |automated matches |Bacillus cereus [TaxId: 226900]
 d3k86a_ :  (ALA1029) (GLU1159)   [view usage] : b.45.1.0 |Split barrel-like |FMN-binding split barrel |automated matches |automated matches |Burkholderia cepacia [TaxId: 292]
 d1ejea_ :    (VAL30)  (ARG157)   [view usage] : b.45.1.2 |Split barrel-like |FMN-binding split barrel |NADH:FMN oxidoreductase-like |FMN-binding protein MTH152 |Methanobacterium thermoautotrophicum [TaxId: 145262]
 d3cb0b_ :    (TYR26)  (ALA156)   [view usage] : b.45.1.0 |Split barrel-like |FMN-binding split barrel |automated matches |automated matches |Brucella melitensis [TaxId: 29459]
 d2r0xa_ :    (VAL18)  (ASN142)   [view usage] : b.45.1.0 |Split barrel-like |FMN-binding split barrel |automated matches |automated matches |Haemophilus somnus [TaxId: 205914]
 d1i0rb_ :    (LEU13)  (LYS140)   [view usage] : b.45.1.2 |Split barrel-like |FMN-binding split barrel |NADH:FMN oxidoreductase-like |Ferric reductase |Archaeoglobus fulgidus [TaxId: 2234]
 d3cb0d_ :    (TYR26)  (ALA156)   [view usage] : b.45.1.0 |Split barrel-like |FMN-binding split barrel |automated matches |automated matches |Brucella melitensis [TaxId: 29459]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
  b.45