Protein Concepts Dictionary

Tableau information

Concept source:  d1xj5a_  amino acid (a.a.) range (GLY46)(SER202)

nSSEs in this Concept: 14

String of secondary struct.elems. (SSEs) defining this concept: EEEEEHEHEHHEHE

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	   (GLY46)   (SER52) E1
	   (ALA59)   (LYS63) E2
	   (LEU68)   (LYS72) E3
	   (GLN76)   (PHE81) E4
	   (GLY87)   (LEU92) E5
	   (THR99)  (ILE118) H6
	  (LYS122)  (GLY128) E7
	  (GLY132)  (ALA139) H8
	  (GLU145)  (GLU151) E9
	  (LYS154)  (PHE164) H10
	  (PHE164)  (ASP173) H11
	  (ARG175)  (ILE180) E12
	  (GLY183)  (ALA190) H13
	  (ASP196)  (SER202) E14

Orientation angles° of SSE-pairs; those in contact shown in bold font
          E1                                                                                                
E2      157.2°   E2                                                                                         
E3       36.8° -139.6°   E3                                                                                  
E4     -146.8°   41.9° -171.7°   E4                                                                           
E5       40.0° -136.6°    3.3°  170.2°   E5                                                                    
H6       35.9° -123.6°   64.4° -122.8°   66.7°   H6                                                             
E7      104.9°  -92.9°  -78.0°   94.0°  -76.3°  140.4°   E7                                                      
H8      -81.9°   84.0°  113.0°  -74.6° -115.1°  -48.7°  166.1°   H8                                               
E9       95.6° -100.3°  -67.3° -104.8°   65.5°  130.4°  -10.8°  172.9°   E9                                        
H10    -141.9°   40.9° -178.4°    9.7°  177.5° -114.0°  103.5°  -65.5°  114.3°   H10                                
H11      53.8° -103.6°   60.5° -127.6°  -61.1°   32.8° -132.5°   61.3° -122.4° -118.1°   H11                         
E12      85.3° -107.2°   54.1° -118.2°   52.0°  118.2°  -24.8°  166.9°  -14.1° -127.5° -108.4°   E12                  
H13     -48.8°  109.8°   71.9° -116.1°  -73.7°  -14.3° -149.9°  -42.0°  139.2° -106.5°   24.5°  125.6°   H13           
E14     115.4°  -84.4°  -90.7°   81.3°  -89.0°  151.3°  -12.8°  154.1°  -23.6°   90.9° -144.3°  -37.5° -162.5°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±4.6°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d2o06a_ :    (TRP20)  (SER174)   [view usage] : c.66.1.17 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |Spermidine synthase |Spermidine synthase |Human (Homo sapiens) [TaxId: 9606]
 d2e5wa_ :     (PHE6)  (SER162)   [view usage] : c.66.1.17 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |Spermidine synthase |automated matches |Pyrococcus horikoshii [TaxId: 70601]
 d1xj5a_ :    (GLY46)  (SER202)   [view usage] : c.66.1.17 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |Spermidine synthase |Spermidine synthase |Thale cress (Arabidopsis thaliana) [TaxId: 3702]
 d2o06b_ :    (TRP20)  (SER174)   [view usage] : c.66.1.17 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |Spermidine synthase |Spermidine synthase |Human (Homo sapiens) [TaxId: 9606]
 d2o05a1 :    (GLY19)  (SER174)   [view usage] : c.66.1.17 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |Spermidine synthase |Spermidine synthase |Human (Homo sapiens) [TaxId: 9606]
 d2zsub_ :     (PHE6)  (SER162)   [view usage] : c.66.1.17 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |Spermidine synthase |automated matches |Pyrococcus horikoshii [TaxId: 53953]
 d1iy9a_ :     (SER2)  (ASP156)   [view usage] : c.66.1.17 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |Spermidine synthase |Spermidine synthase |Bacillus subtilis [TaxId: 1423]
 d1inlc_ :    (TRP18)  (SER171)   [view usage] : c.66.1.17 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |Spermidine synthase |Spermidine synthase |Thermotoga maritima [TaxId: 2336]
 d2o07b_ :    (TRP20)  (SER174)   [view usage] : c.66.1.17 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |Spermidine synthase |Spermidine synthase |Human (Homo sapiens) [TaxId: 9606]
 d1jq3a_ :    (TRP18)  (SER171)   [view usage] : c.66.1.17 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |Spermidine synthase |Spermidine synthase |Thermotoga maritima [TaxId: 2336]
 d2zsue_ :     (GLU5)  (SER162)   [view usage] : c.66.1.17 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |Spermidine synthase |automated matches |Pyrococcus horikoshii [TaxId: 53953]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
  c.66