Protein Concepts Dictionary

Tableau information

Concept source:  d1ophb_  amino acid (a.a.) range (TYR29)(VAL235)

nSSEs in this Concept: 14

String of secondary struct.elems. (SSEs) defining this concept: EEEEEEEEEHEEEH

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	   (TYR29)   (SER37) E1
	   (CYS42)   (ASN48) E2
	   (GLN50)   (SER54) E3
	   (GLY62)   (GLY69) E4
	   (ASN79)   (SER84) E5
	   (SER86)   (HIS91) E6
	  (ASP102)  (LYS107) E7
	  (GLN135)  (TRP141) E8
	  (LEU155)  (SER164) E9
	  (SER164)  (TYR172) H10
	  (ASN179)  (GLY184) E11
	  (GLY196)  (SER202) E12
	  (PRO225)  (THR229) E13
	  (VAL231)  (VAL235) H14

Orientation angles° of SSE-pairs; those in contact shown in bold font
          E1                                                                                                
E2      131.9°   E2                                                                                         
E3      -76.0°  143.7°   E3                                                                                  
E4      147.4°  -67.5°  101.9°   E4                                                                           
E5      -48.0°  100.5°  -81.8°  164.5°   E5                                                                    
E6     -103.5°  100.7°  -44.2°   96.0°  -76.1°   E6                                                             
E7       92.0°  -52.9°  163.2°  -81.9°   99.0°  152.4°   E7                                                      
E8      -30.8°  119.6°  -96.0°  120.5°  -73.5° -132.8°   68.5°   E8                                               
E9      109.6°  -83.5°   62.9°  -97.4°   70.6°   19.3° -133.3°  140.4°   E9                                        
H10     -17.9° -148.8°   58.5°  140.3°  -54.2°  -91.0°  108.3°  -41.8°  101.5°   H10                                
E11    -103.2°  113.6°  -71.9°   47.5° -145.8°  -98.3°  100.2°  -87.6°  113.6°   92.8°   E11                         
E12    -175.9°   51.4°  100.0°  -33.7°  131.1°   72.7°  -92.1°  152.2°  -67.4°  158.3°   76.1°   E12                  
E13      88.3°  -44.5°  140.5° -110.2°   61.4°  108.5°  -48.5°   87.3°  -90.1° -104.4°  147.5°  -94.5°   E13           
H14     103.5°  -29.9°  143.5°  -97.0°   72.5°  103.2°  -50.3°  101.0°  -83.9° -119.3°  140.4°  -79.2°   15.3°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±4.1°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d1v2kt_ :    (GLN30)  (VAL235)   [view usage] : b.47.1.2 |Trypsin-like serine proteases |Trypsin-like serine proteases |Eukaryotic proteases |Trypsin(ogen) |Cow (Bos taurus) [TaxId: 9913]
 d1j14a_ :    (GLN30)  (VAL235)   [view usage] : b.47.1.2 |Trypsin-like serine proteases |Trypsin-like serine proteases |Eukaryotic proteases |Trypsin(ogen) |Norway rat (Rattus norvegicus) [TaxId: 10116]
 d1ezsc_ :   (GLN430)  (ASN645)   [view usage] : b.47.1.2 |Trypsin-like serine proteases |Trypsin-like serine proteases |Eukaryotic proteases |Trypsin(ogen) |Norway rat (Rattus norvegicus) [TaxId: 10116]
 d3vfea_ :    (GLN30)  (ALA244)   [view usage] : b.47.1.2 |Trypsin-like serine proteases |Trypsin-like serine proteases |Eukaryotic proteases |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d1v2jt_ :    (GLN30)  (VAL235)   [view usage] : b.47.1.2 |Trypsin-like serine proteases |Trypsin-like serine proteases |Eukaryotic proteases |Trypsin(ogen) |Cow (Bos taurus) [TaxId: 9913]
 d2r9pa_ :    (GLN30)  (SER246)   [view usage] : b.47.1.2 |Trypsin-like serine proteases |Trypsin-like serine proteases |Eukaryotic proteases |Trypsin(ogen) |Human (Homo sapiens), trypsin IV (brain isoform) [TaxId: 9606]
 d4b2ba_ :    (GLN30)  (VAL235)   [view usage] : b.47.1.2 |Trypsin-like serine proteases |Trypsin-like serine proteases |Eukaryotic proteases |Trypsin(ogen) |Cow (Bos taurus) [TaxId: 9913]
 d4b2aa_ :    (TYR29)  (ASN245)   [view usage] : b.47.1.2 |Trypsin-like serine proteases |Trypsin-like serine proteases |Eukaryotic proteases |Trypsin(ogen) |Cow (Bos taurus) [TaxId: 9913]
 d4b2ca_ :    (TYR29)  (VAL235)   [view usage] : b.47.1.2 |Trypsin-like serine proteases |Trypsin-like serine proteases |Eukaryotic proteases |Trypsin(ogen) |Cow (Bos taurus) [TaxId: 9913]
 d1ophb_ :    (TYR29)  (VAL235)   [view usage] : b.47.1.2 |Trypsin-like serine proteases |Trypsin-like serine proteases |Eukaryotic proteases |Trypsin(ogen) |Cow (Bos taurus) [TaxId: 9913]
 d1kynb_ :   (TYR329)  (THR541)   [view usage] : b.47.1.2 |Trypsin-like serine proteases |Trypsin-like serine proteases |Eukaryotic proteases |Cathepsin G |Human (Homo sapiens) [TaxId: 9606]
 d1fi8b_ :    (TYR32)  (LYS243)   [view usage] : b.47.1.2 |Trypsin-like serine proteases |Trypsin-like serine proteases |Eukaryotic proteases |Granzyme B |Norway rat (Rattus norvegicus) [TaxId: 10116]
 d4b1ta_ :    (TYR29)  (VAL235)   [view usage] : b.47.1.2 |Trypsin-like serine proteases |Trypsin-like serine proteases |Eukaryotic proteases |Trypsin(ogen) |Cow (Bos taurus) [TaxId: 9913]
 d1amha_ :    (TYR29)  (VAL235)   [view usage] : b.47.1.2 |Trypsin-like serine proteases |Trypsin-like serine proteases |Eukaryotic proteases |Trypsin(ogen) |Norway rat (Rattus norvegicus) [TaxId: 10116]
 d1co7e_ :    (GLN30)  (VAL235)   [view usage] : b.47.1.2 |Trypsin-like serine proteases |Trypsin-like serine proteases |Eukaryotic proteases |Trypsin(ogen) |Norway rat (Rattus norvegicus) [TaxId: 10116]
 d1kyna_ :    (MET30)  (THR241)   [view usage] : b.47.1.2 |Trypsin-like serine proteases |Trypsin-like serine proteases |Eukaryotic proteases |Cathepsin G |Human (Homo sapiens) [TaxId: 9606]
 d4niwa_ :    (GLN30)  (VAL235)   [view usage] : b.47.1.2 |Trypsin-like serine proteases |Trypsin-like serine proteases |Eukaryotic proteases |automated matches |Cow (Bos taurus) [TaxId: 9913]
 d1trma_ :    (GLN30)  (ASN245)   [view usage] : b.47.1.2 |Trypsin-like serine proteases |Trypsin-like serine proteases |Eukaryotic proteases |Trypsin(ogen) |Norway rat (Rattus norvegicus) [TaxId: 10116]
 d1ntpa_ :    (GLN30)  (VAL235)   [view usage] : b.47.1.2 |Trypsin-like serine proteases |Trypsin-like serine proteases |Eukaryotic proteases |Trypsin(ogen) |Cow (Bos taurus) [TaxId: 9913]
 d1dpoa_ :    (GLN30)  (VAL235)   [view usage] : b.47.1.2 |Trypsin-like serine proteases |Trypsin-like serine proteases |Eukaryotic proteases |Trypsin(ogen) |Norway rat (Rattus norvegicus) [TaxId: 10116]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
  b.47