Protein Concepts Dictionary

Tableau information

Concept source:  d1uddb_  amino acid (a.a.) range (MET4)(GLY214)

nSSEs in this Concept: 13

String of secondary struct.elems. (SSEs) defining this concept: HHHHHHHHHHHHH

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	    (MET4)   (GLU14) H1
	   (GLU14)   (HIS23) H2
	   (HIS23)   (GLY32) H3
	   (LEU36)   (ALA64) H4
	   (TYR66)   (VAL80) H5
	   (THR81)   (ASP95) H6
	   (LEU98)  (THR104) H7
	  (THR107)  (TYR122) H8
	  (ASN125)  (HIS147) H9
	  (HIS147)  (ASP153) H10
	  (ILE156)  (SER168) H11
	  (SER168)  (SER185) H12
	  (TYR190)  (GLY214) H13

Orientation angles° of SSE-pairs; those in contact shown in bold font
          H1                                                                                         
H2      -68.6°   H2                                                                                  
H3     -107.6°  -46.3°   H3                                                                           
H4      142.0° -143.7° -110.4°   H4                                                                    
H5      -46.5°   23.2°   68.6° -155.8°   H5                                                             
H6      -34.8°   35.8°   73.2° -173.6°  -19.7°   H6                                                      
H7       68.2°  132.9°  172.7°  -74.0°  109.9°  103.0°   H7                                               
H8      148.1° -143.1° -102.5°  -12.8° -162.9°  173.6°  -80.7°   H8                                        
H9      -64.4°  -44.1°  -48.5° -148.5°   49.1°   37.8°  124.9° -135.9°   H9                                 
H10      78.8°   11.6°  -42.2° -132.1°   32.4°   47.2°  138.9° -132.3°   52.8°   H10                         
H11    -137.7° -152.4° -107.2°   23.2°  175.6° -162.1°  -74.4°   14.1° -129.5° -143.3°   H11                  
H12     102.5°  166.2° -146.7°   41.2° -144.6° -137.1°  -35.2°   45.8° -142.8°  163.5°  -39.5°   H12           
H13     -50.7°   18.7°   64.2°  154.8°    4.5°  -21.7°  114.4° -159.7°  -47.2°   28.1°  171.1°  149.1°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±5.2°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d1uddb_ :     (MET4)  (GLY214)   [view usage] : a.132.1.3 |Heme oxygenase-like |Heme oxygenase-like |TENA/THI-4 |Hypothetical transcriptional regulator PH1161 |Pyrococcus horikoshii [TaxId: 53953]
 d2rd3d_ :     (VAL3)  (GLN216)   [view usage] : a.132.1.0 |Heme oxygenase-like |Heme oxygenase-like |automated matches |automated matches |Helicobacter pylori [TaxId: 210]
 d1udda_ :     (MET4)  (ARG213)   [view usage] : a.132.1.3 |Heme oxygenase-like |Heme oxygenase-like |TENA/THI-4 |Hypothetical transcriptional regulator PH1161 |Pyrococcus horikoshii [TaxId: 53953]
 d2rd3a_ :     (VAL3)  (SER217)   [view usage] : a.132.1.0 |Heme oxygenase-like |Heme oxygenase-like |automated matches |automated matches |Helicobacter pylori [TaxId: 210]
 d3ibxa_ :     (VAL3)  (SER217)   [view usage] : a.132.1.0 |Heme oxygenase-like |Heme oxygenase-like |automated matches |automated matches |Helicobacter pylori [TaxId: 210]
 d2gm8b_ :     (GLY1)  (TYR209)   [view usage] : a.132.1.0 |Heme oxygenase-like |Heme oxygenase-like |automated matches |automated matches |Pyrobaculum aerophilum [TaxId: 178306]
 d2gm8c_ :     (GLY1)  (GLU210)   [view usage] : a.132.1.0 |Heme oxygenase-like |Heme oxygenase-like |automated matches |automated matches |Pyrobaculum aerophilum [TaxId: 178306]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
 a.132