Protein Concepts Dictionary

Tableau information

Concept source:  d3lj7b_  amino acid (a.a.) range (GLN35)(THR257)

nSSEs in this Concept: 13

String of secondary struct.elems. (SSEs) defining this concept: HHHHEHEHEHEHE

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	   (GLN35)   (PRO67) H1
	   (SER71)   (LEU77) H2
	   (LEU79)   (GLY89) H3
	   (SER92)  (THR111) H4
	  (THR115)  (ASP120) E5
	  (CYS121)  (GLN127) H6
	  (VAL137)  (LYS142) E7
	  (VAL169)  (GLY178) H8
	  (GLY178)  (PRO188) E9
	  (GLY219)  (GLY228) H10
	  (GLY233)  (ILE238) E11
	  (GLY240)  (GLY250) H12
	  (ILE251)  (THR257) E13

Orientation angles° of SSE-pairs; those in contact shown in bold font
          H1                                                                                         
H2      121.6°   H2                                                                                  
H3       58.3° -117.1°   H3                                                                           
H4     -133.9°  -84.1° -146.8°   H4                                                                    
E5       60.0°   97.7°  -20.9° -161.5°   E5                                                             
H6      -44.6°   79.3°  -63.9°  149.0°   48.3°   H6                                                      
E7     -165.4°  -65.5° -132.3°  -31.4°  133.9°  144.8°   E7                                               
H8        6.8°  124.2°  -51.6°  138.1°  -54.5°  -45.4° -168.6°   H8                                        
E9     -141.7°  -77.9°  146.5°   -7.9°  156.4°  148.9°  -23.7°  146.1°   E9                                 
H10     -19.8° -126.3°   75.1°  114.2°  -79.6°  -59.0°  145.6°   25.1°  121.9°   H10                         
E11    -150.6°  -32.4° -134.8°  -54.2°  121.5°  111.6°  -33.3°  155.1°  -47.1° -144.6°   E11                  
H12     -51.2° -134.2°   96.6°   83.1° -107.8°  -89.9°  114.3°  -55.0°   91.0°  -32.2°  128.6°   H12           
E13     122.8°   34.7°  -87.8° -100.3°   72.7°   80.4°  -70.8°  120.5°  -92.4°  139.4°  -48.8° -166.4°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±4.1°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d3qj9b_ :    (ARG34)  (THR257)   [view usage] : c.117.1.1 |Amidase signature (AS) enzymes |Amidase signature (AS) enzymes |Amidase signature (AS) enzymes |automated matches |Norway rat (Rattus norvegicus) [TaxId: 10116]
 d4do3b_ :    (GLN35)  (THR257)   [view usage] : c.117.1.1 |Amidase signature (AS) enzymes |Amidase signature (AS) enzymes |Amidase signature (AS) enzymes |automated matches |Norway rat (Rattus norvegicus) [TaxId: 10116]
 d2wj2b_ :    (ARG34)  (THR257)   [view usage] : c.117.1.1 |Amidase signature (AS) enzymes |Amidase signature (AS) enzymes |Amidase signature (AS) enzymes |automated matches |Norway rat (Rattus norvegicus) [TaxId: 10116]
 d2wj1a_ :    (ARG34)  (THR257)   [view usage] : c.117.1.1 |Amidase signature (AS) enzymes |Amidase signature (AS) enzymes |Amidase signature (AS) enzymes |automated matches |Norway rat (Rattus norvegicus) [TaxId: 10116]
 d2wapb_ :    (ARG34)  (THR257)   [view usage] : c.117.1.1 |Amidase signature (AS) enzymes |Amidase signature (AS) enzymes |Amidase signature (AS) enzymes |automated matches |Norway rat (Rattus norvegicus) [TaxId: 10116]
 d4j5pa_ :    (LYS36)  (THR257)   [view usage] : c.117.1.1 |Amidase signature (AS) enzymes |Amidase signature (AS) enzymes |Amidase signature (AS) enzymes |automated matches |Norway rat (Rattus norvegicus) [TaxId: 10116]
 d3lj7b_ :    (GLN35)  (THR257)   [view usage] : c.117.1.1 |Amidase signature (AS) enzymes |Amidase signature (AS) enzymes |Amidase signature (AS) enzymes |automated matches |Norway rat (Rattus norvegicus) [TaxId: 10116]
 d3qk5b_ :    (GLN35)  (THR257)   [view usage] : c.117.1.1 |Amidase signature (AS) enzymes |Amidase signature (AS) enzymes |Amidase signature (AS) enzymes |automated matches |Norway rat (Rattus norvegicus) [TaxId: 10116]
 d2wj2a_ :    (GLN35)  (THR257)   [view usage] : c.117.1.1 |Amidase signature (AS) enzymes |Amidase signature (AS) enzymes |Amidase signature (AS) enzymes |automated matches |Norway rat (Rattus norvegicus) [TaxId: 10116]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
 c.117