Protein Concepts Dictionary

Tableau information

Concept source:  d1qopb_  amino acid (a.a.) range (PRO18)(SER178)

nSSEs in this Concept: 13

String of secondary struct.elems. (SSEs) defining this concept: HHEHEHEHEHHEH

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	   (PRO18)   (ASP38) H1
	   (ASP38)   (GLY54) H2
	   (PRO56)   (CYS62) E3
	   (CYS62)   (ALA67) H4
	   (THR71)   (ARG77) E5
	   (ALA85)  (GLY102) H6
	  (SER104)  (GLU109) E7
	  (GLY113)  (LEU126) H8
	  (LYS129)  (GLY135) E9
	  (GLY135)  (ARG141) H10
	  (GLN142)  (GLY153) H11
	  (GLU155)  (SER161) E12
	  (LEU166)  (SER178) H13

Orientation angles° of SSE-pairs; those in contact shown in bold font
          H1                                                                                         
H2      -87.2°   H2                                                                                  
E3      -88.5°   49.4°   E3                                                                           
H4     -103.5°   70.3°  -24.5°   H4                                                                    
E5      103.6°  103.9°  150.7°  151.9°   E5                                                             
H6       98.7°  143.9° -164.6° -140.3°   40.1°   H6                                                      
E7     -113.0°  -59.6°  -25.1°   16.2° -137.9°  143.1°   E7                                               
H8       61.0°  114.4°  147.8° -162.4°   45.5°  -44.3° -172.6°   H8                                        
E9     -124.2°  -66.3°  -36.8°   22.7° -129.3°  131.9°  -11.6° -174.7°   E9                                 
H10      54.3°   36.7°   70.6°   95.1°  -94.7° -124.6°   90.4°  -82.5°   99.7°   H10                         
H11      70.1°  122.2°  158.1° -164.4°   40.0°  -33.9° -176.8°   10.5° -165.2°  -92.3°   H11                  
E12    -138.2°  -92.8°  -61.4°  -39.2°  116.8°  105.3°  -37.9°  149.4°  -27.8° -127.4°  139.1°   E12           
H13      90.9°  142.3° -168.3° -145.8°   40.3°   -8.0° -150.6°   36.7°  139.7° -118.1°  -26.4°  112.7°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±4.1°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d2j9zb_ :    (PRO18)  (SER178)   [view usage] : c.79.1.1 |Tryptophan synthase beta subunit-like PLP-dependent enzymes |Tryptophan synthase beta subunit-like PLP-dependent enzymes |Tryptophan synthase beta subunit-like PLP-dependent enzymes |automated matches |Salmonella typhimurium [TaxId: 90371]
 d2clfb_ :    (PRO18)  (TYR181)   [view usage] : c.79.1.1 |Tryptophan synthase beta subunit-like PLP-dependent enzymes |Tryptophan synthase beta subunit-like PLP-dependent enzymes |Tryptophan synthase beta subunit-like PLP-dependent enzymes |automated matches |Salmonella typhimurium [TaxId: 90371]
 d1k7xb_ :    (PRO18)  (ASP176)   [view usage] : c.79.1.1 |Tryptophan synthase beta subunit-like PLP-dependent enzymes |Tryptophan synthase beta subunit-like PLP-dependent enzymes |Tryptophan synthase beta subunit-like PLP-dependent enzymes |Tryptophan synthase, beta-subunit |Salmonella typhimurium [TaxId: 90371]
 d1k8zb_ :    (PRO18)  (ASP176)   [view usage] : c.79.1.1 |Tryptophan synthase beta subunit-like PLP-dependent enzymes |Tryptophan synthase beta subunit-like PLP-dependent enzymes |Tryptophan synthase beta subunit-like PLP-dependent enzymes |Tryptophan synthase, beta-subunit |Salmonella typhimurium [TaxId: 90371]
 d2clib_ :    (PRO18)  (TYR181)   [view usage] : c.79.1.1 |Tryptophan synthase beta subunit-like PLP-dependent enzymes |Tryptophan synthase beta subunit-like PLP-dependent enzymes |Tryptophan synthase beta subunit-like PLP-dependent enzymes |automated matches |Salmonella typhimurium [TaxId: 90371]
 d1k7eb_ :    (PRO18)  (SER180)   [view usage] : c.79.1.1 |Tryptophan synthase beta subunit-like PLP-dependent enzymes |Tryptophan synthase beta subunit-like PLP-dependent enzymes |Tryptophan synthase beta subunit-like PLP-dependent enzymes |Tryptophan synthase, beta-subunit |Salmonella typhimurium [TaxId: 90371]
 d2clmb_ :    (PRO18)  (ASP176)   [view usage] : c.79.1.1 |Tryptophan synthase beta subunit-like PLP-dependent enzymes |Tryptophan synthase beta subunit-like PLP-dependent enzymes |Tryptophan synthase beta subunit-like PLP-dependent enzymes |automated matches |Salmonella typhimurium [TaxId: 90371]
 d2j9yb_ :    (PRO18)  (SER178)   [view usage] : c.79.1.1 |Tryptophan synthase beta subunit-like PLP-dependent enzymes |Tryptophan synthase beta subunit-like PLP-dependent enzymes |Tryptophan synthase beta subunit-like PLP-dependent enzymes |automated matches |Salmonella typhimurium [TaxId: 90371]
 d3pr2b_ :    (PRO18)  (SER178)   [view usage] : c.79.1.1 |Tryptophan synthase beta subunit-like PLP-dependent enzymes |Tryptophan synthase beta subunit-like PLP-dependent enzymes |Tryptophan synthase beta subunit-like PLP-dependent enzymes |Tryptophan synthase, beta-subunit |Salmonella typhimurium [TaxId: 90371]
 d1v8za1 :    (PRO12)  (VAL173)   [view usage] : c.79.1.1 |Tryptophan synthase beta subunit-like PLP-dependent enzymes |Tryptophan synthase beta subunit-like PLP-dependent enzymes |Tryptophan synthase beta subunit-like PLP-dependent enzymes |Tryptophan synthase, beta-subunit |Pyrococcus furiosus [TaxId: 2261]
 d1v8zb_ :    (PRO12)  (VAL173)   [view usage] : c.79.1.1 |Tryptophan synthase beta subunit-like PLP-dependent enzymes |Tryptophan synthase beta subunit-like PLP-dependent enzymes |Tryptophan synthase beta subunit-like PLP-dependent enzymes |Tryptophan synthase, beta-subunit |Pyrococcus furiosus [TaxId: 2261]
 d1a50b_ :    (PRO18)  (TYR181)   [view usage] : c.79.1.1 |Tryptophan synthase beta subunit-like PLP-dependent enzymes |Tryptophan synthase beta subunit-like PLP-dependent enzymes |Tryptophan synthase beta subunit-like PLP-dependent enzymes |Tryptophan synthase, beta-subunit |Salmonella typhimurium [TaxId: 90371]
 d1fuyb_ :    (PRO18)  (TYR181)   [view usage] : c.79.1.1 |Tryptophan synthase beta subunit-like PLP-dependent enzymes |Tryptophan synthase beta subunit-like PLP-dependent enzymes |Tryptophan synthase beta subunit-like PLP-dependent enzymes |Tryptophan synthase, beta-subunit |Salmonella typhimurium [TaxId: 90371]
 d2tysb_ :    (PRO18)  (SER178)   [view usage] : c.79.1.1 |Tryptophan synthase beta subunit-like PLP-dependent enzymes |Tryptophan synthase beta subunit-like PLP-dependent enzymes |Tryptophan synthase beta subunit-like PLP-dependent enzymes |Tryptophan synthase, beta-subunit |Salmonella typhimurium [TaxId: 90371]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
  c.79