Protein Concepts Dictionary

Tableau information

Concept source:  d4lbva1  amino acid (a.a.) range (ASP46)(ASP207)

nSSEs in this Concept: 13

String of secondary struct.elems. (SSEs) defining this concept: HHEEHEHEHHEHH

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	   (ASP46)   (LYS52) H1
	   (ALA53)   (ARG59) H2
	   (ASN64)   (ALA73) E3
	   (SER78)   (PRO83) E4
	   (ILE89)   (MET99) H5
	  (ASP100)  (VAL106) E6
	  (MET113)  (GLY127) H7
	  (PRO129)  (MET135) E8
	  (LYS137)  (ASP142) H9
	  (PRO144)  (GLU162) H10
	  (VAL168)  (ARG172) E11
	  (LEU176)  (ASN185) H12
	  (ASN193)  (ASP207) H13

Orientation angles° of SSE-pairs; those in contact shown in bold font
          H1                                                                                         
H2      112.4°   H2                                                                                  
E3      136.0° -100.0°   E3                                                                           
E4      -75.0°   42.7°  142.7°   E4                                                                    
H5      108.2° -122.6°  -28.0° -160.2°   H5                                                             
E6     -113.8°  -19.0°  106.6°  -38.8°  133.3°   E6                                                      
H7       63.9°  153.6°  -73.7°  138.2°  -46.0° -172.3°   H7                                               
E8     -134.5°  -40.1°   89.5°  -62.2°  117.3°  -26.5°  159.1°   E8                                        
H9     -118.0°   14.1°  -88.2°   55.0° -108.9°   31.6° -141.8°  -46.6°   H9                                 
H10      30.8°  132.1° -105.2°  103.6°  -77.4°  141.1°  -34.7°  165.2°  130.0°   H10                         
E11    -129.5°  -60.2°   92.0°  -70.5°  116.8°  -43.6°  143.9°  -21.3°  -67.9°  154.6°   E11                  
H12     118.9° -117.9°   64.5° -125.4°   71.0° -104.0°   83.2°   78.4° -119.3° -109.7°   60.8°   H12           
H13      46.5°  128.3°  -90.2°  112.5°  -63.5°  143.8°  -29.3°  168.0°  121.4°  -17.9° -170.6° -112.2°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±4.1°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d1ob5a3 :    (ASP46)  (GLU208)   [view usage] : c.37.1.8 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |G proteins |automated matches |Thermus aquaticus [TaxId: 271]
 d4lbva1 :    (ASP46)  (ASP207)   [view usage] : c.37.1.8 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |G proteins |automated matches |Thermus thermophilus [TaxId: 274]
 d2c77a3 :    (ASP46)  (GLU208)   [view usage] : c.37.1.8 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |G proteins |automated matches |Thermus thermophilus HB8 [TaxId: 300852]
 d2c78a3 :    (ASP46)  (GLU208)   [view usage] : c.37.1.8 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |G proteins |automated matches |Thermus thermophilus HB8 [TaxId: 300852]
 d1b23p3 :    (ASP46)  (GLU208)   [view usage] : c.37.1.8 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |G proteins |Elongation factor Tu (EF-Tu), N-terminal (G) domain |Thermus aquaticus [TaxId: 271]
 d4h9ga1 :    (ASP46)  (ASP207)   [view usage] : c.37.1.8 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |G proteins |automated matches |Thermus thermophilus [TaxId: 274]
 d1efta3 :    (ASP46)  (GLU208)   [view usage] : c.37.1.8 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |G proteins |Elongation factor Tu (EF-Tu), N-terminal (G) domain |Thermus aquaticus [TaxId: 271]
 d1exma3 :    (ASP46)  (ILE210)   [view usage] : c.37.1.8 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |G proteins |Elongation factor Tu (EF-Tu), N-terminal (G) domain |Thermus thermophilus [TaxId: 274]
 d4lbya1 :    (ASP46)  (ILE210)   [view usage] : c.37.1.8 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |G proteins |automated matches |Thermus thermophilus [TaxId: 274]
 d1ob2a3 :    (ALA45)  (TYR198)   [view usage] : c.37.1.8 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |G proteins |Elongation factor Tu (EF-Tu), N-terminal (G) domain |Escherichia coli [TaxId: 562]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
  c.37