Protein Concepts Dictionary

Tableau information

Concept source:  d2qeej_  amino acid (a.a.) range (SER5)(ARG164)

nSSEs in this Concept: 13

String of secondary struct.elems. (SSEs) defining this concept: HEHHHHHHHHEHE

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	    (SER5)   (ASN19) H1
	   (PRO21)   (HIS26) E2
	   (GLY35)   (LEU39) H3
	   (ILE42)   (TYR48) H4
	   (TYR48)   (TRP58) H5
	   (SER62)   (MET69) H6
	   (SER70)   (ARG86) H7
	   (SER90)  (GLY104) H8
	  (ASP111)  (LYS122) H9
	  (SER124)  (ASN136) H10
	  (SER138)  (MET142) E11
	  (ASP148)  (GLY158) H12
	  (GLY158)  (ARG164) E13

Orientation angles° of SSE-pairs; those in contact shown in bold font
          H1                                                                                         
E2      -64.3°   E2                                                                                  
H3     -147.4°   92.3°   H3                                                                           
H4      112.9°   50.6°  -55.9°   H4                                                                    
H5     -107.2°   64.6°   40.1°  -59.8°   H5                                                             
H6      -63.3° -127.2°  137.8° -160.6°  139.3°   H6                                                      
H7     -168.0°  109.6°   21.1°   64.7°   61.0° -123.1°   H7                                               
H8      -77.6° -141.8° -120.6°  165.3° -128.6°   17.2° -107.1°   H8                                        
H9      -52.2°  -96.4°  159.4°  117.4° -158.1°  -44.2°  139.9°   60.0°   H9                                 
H10     163.0°  114.8°   46.7°  -64.3°   86.2°  113.2°   28.3°  102.5°  112.8°   H10                         
E11     -57.1°   -7.2°   99.1°   57.4°   69.4° -120.0°  116.8° -134.6°  -90.7°  121.4°   E11                  
H12      70.0° -121.9° -141.8° -132.4°  167.7°   28.6° -120.8°   39.5°   25.5°  -99.0° -116.0°   H12           
E13     157.2°  136.2°  -45.0°  -89.6°   80.7°   96.5°  -26.6°   80.8°  121.1°  -32.9°  143.3°  -97.6°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±4.1°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d2qeel_ :     (SER5)  (ARG164)   [view usage] : c.1.9.8 |TIM beta/alpha-barrel |Metallo-dependent hydrolases |Uronate isomerase-like |Uncharacterized protein BH0493 |Bacillus halodurans [TaxId: 86665]
 d2pnkc_ :     (ARG6)  (LEU169)   [view usage] : c.1.9.8 |TIM beta/alpha-barrel |Metallo-dependent hydrolases |Uronate isomerase-like |Uncharacterized protein BH0493 |Bacillus halodurans [TaxId: 86665]
 d2pnkh_ :     (ARG6)  (LEU169)   [view usage] : c.1.9.8 |TIM beta/alpha-barrel |Metallo-dependent hydrolases |Uronate isomerase-like |Uncharacterized protein BH0493 |Bacillus halodurans [TaxId: 86665]
 d2qeej_ :     (SER5)  (ARG164)   [view usage] : c.1.9.8 |TIM beta/alpha-barrel |Metallo-dependent hydrolases |Uronate isomerase-like |Uncharacterized protein BH0493 |Bacillus halodurans [TaxId: 86665]
 d2q6ea_ :     (SER5)  (LEU169)   [view usage] : c.1.9.8 |TIM beta/alpha-barrel |Metallo-dependent hydrolases |Uronate isomerase-like |Uncharacterized protein BH0493 |Bacillus halodurans [TaxId: 86665]
 d2pnkl_ :     (SER5)  (ARG164)   [view usage] : c.1.9.8 |TIM beta/alpha-barrel |Metallo-dependent hydrolases |Uronate isomerase-like |Uncharacterized protein BH0493 |Bacillus halodurans [TaxId: 86665]
 d2pnkf_ :     (ARG6)  (LEU171)   [view usage] : c.1.9.8 |TIM beta/alpha-barrel |Metallo-dependent hydrolases |Uronate isomerase-like |Uncharacterized protein BH0493 |Bacillus halodurans [TaxId: 86665]
 d2pnka1 :     (SER5)  (ARG164)   [view usage] : c.1.9.8 |TIM beta/alpha-barrel |Metallo-dependent hydrolases |Uronate isomerase-like |Uncharacterized protein BH0493 |Bacillus halodurans [TaxId: 86665]
 d2qeee_ :     (SER5)  (LEU169)   [view usage] : c.1.9.8 |TIM beta/alpha-barrel |Metallo-dependent hydrolases |Uronate isomerase-like |Uncharacterized protein BH0493 |Bacillus halodurans [TaxId: 86665]
 d2pnke_ :     (ARG6)  (LEU171)   [view usage] : c.1.9.8 |TIM beta/alpha-barrel |Metallo-dependent hydrolases |Uronate isomerase-like |Uncharacterized protein BH0493 |Bacillus halodurans [TaxId: 86665]
 d3hk5a_ :     (GLU7)  (ARG164)   [view usage] : c.1.9.8 |TIM beta/alpha-barrel |Metallo-dependent hydrolases |Uronate isomerase-like |Uncharacterized protein BH0493 |Bacillus halodurans [TaxId: 86665]
 d2pnkd_ :     (ARG6)  (ARG164)   [view usage] : c.1.9.8 |TIM beta/alpha-barrel |Metallo-dependent hydrolases |Uronate isomerase-like |Uncharacterized protein BH0493 |Bacillus halodurans [TaxId: 86665]
 d2qeek_ :     (SER5)  (ARG164)   [view usage] : c.1.9.8 |TIM beta/alpha-barrel |Metallo-dependent hydrolases |Uronate isomerase-like |Uncharacterized protein BH0493 |Bacillus halodurans [TaxId: 86665]
 d3hk8a_ :     (SER5)  (ARG164)   [view usage] : c.1.9.8 |TIM beta/alpha-barrel |Metallo-dependent hydrolases |Uronate isomerase-like |Uncharacterized protein BH0493 |Bacillus halodurans [TaxId: 86665]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
   c.1