Protein Concepts Dictionary

Tableau information

Concept source:  d4hpna2  amino acid (a.a.) range (SER146)(ALA313)

nSSEs in this Concept: 13

String of secondary struct.elems. (SSEs) defining this concept: HEHEHHHEHEHEH

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	  (SER146)  (GLY159) H1
	  (HIS161)  (LYS166) E2
	  (GLU172)  (ALA184) H3
	  (ARG190)  (ALA195) E4
	  (THR200)  (ALA211) H5
	  (ALA211)  (GLY215) H6
	  (LEU228)  (ALA236) H7
	  (ILE240)  (GLY245) E8
	  (GLY250)  (GLY261) H9
	  (ASP264)  (ASP269) E10
	  (GLY275)  (GLY290) H11
	  (ARG292)  (TRP298) E12
	  (GLY301)  (ALA313) H13

Orientation angles° of SSE-pairs; those in contact shown in bold font
          H1                                                                                         
E2      157.1°   E2                                                                                  
H3      -31.8°  163.2°   H3                                                                           
E4      142.3°  -14.8°  161.8°   E4                                                                    
H5      -55.5°  147.2°  -29.3°  161.8°   H5                                                             
H6      -11.6° -168.4°   21.4° -153.7°  -44.0°   H6                                                      
H7      -76.9°  125.5°  -55.2°  139.6°  -26.1°  -66.1°   H7                                               
E8       80.9°  -77.7°  100.7°  -64.1°  129.9°   90.9° -155.8°   E8                                        
H9     -104.8°   93.3°  -92.5°  104.7°  -64.7°  -97.0°  -39.1°  161.5°   H9                                 
E10      81.7°  -83.8°   86.7°  -75.1°  111.4°   87.4°  134.7°  -30.2°  166.0°   E10                         
H11     -95.1°   99.0°  -90.9°  107.3°  -67.0°  -89.7°  -44.5°  148.8°  -16.2° -176.8°   H11                  
E12     109.5°  -65.0°   99.7°  -64.2°  111.0°  110.7°  121.5°  -58.0°  132.6°  -34.5°  148.4°   E12           
H13     -58.5°  124.8°  -71.4°  123.0°  -65.3°  -58.1°  -60.7°  114.5°  -57.7°  134.4°  -42.5° -167.8°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±5.3°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d1r6wa1 :   (ASP113)  (TRP280)   [view usage] : c.1.11.2 |TIM beta/alpha-barrel |Enolase C-terminal domain-like |D-glucarate dehydratase-like |O-succinylbenzoate synthase |Escherichia coli [TaxId: 562]
 d2gdqa1 :   (TRP139)  (LEU311)   [view usage] : c.1.11.2 |TIM beta/alpha-barrel |Enolase C-terminal domain-like |D-glucarate dehydratase-like |Hypothetical protein YitF |Bacillus subtilis [TaxId: 1423]
 d1fhva1 :   (ASP113)  (TRP280)   [view usage] : c.1.11.2 |TIM beta/alpha-barrel |Enolase C-terminal domain-like |D-glucarate dehydratase-like |O-succinylbenzoate synthase |Escherichia coli [TaxId: 562]
 d4dyea2 :   (THR141)  (THR314)   [view usage] : c.1.11.0 |TIM beta/alpha-barrel |Enolase C-terminal domain-like |automated matches |automated matches |Streptomyces coelicolor [TaxId: 1902]
 d3gc2a2 :   (PRO114)  (TRP280)   [view usage] : c.1.11.2 |TIM beta/alpha-barrel |Enolase C-terminal domain-like |D-glucarate dehydratase-like |automated matches |Salmonella typhimurium [TaxId: 602]
 d2pgwc2 :   (THR147)  (ALA316)   [view usage] : c.1.11.0 |TIM beta/alpha-barrel |Enolase C-terminal domain-like |automated matches |automated matches |Sinorhizobium meliloti [TaxId: 266834]
 d4hpna2 :   (SER146)  (ALA313)   [view usage] : c.1.11.0 |TIM beta/alpha-barrel |Enolase C-terminal domain-like |automated matches |automated matches |Agrobacterium tumefaciens [TaxId: 176299]
 d3q45a2 :   (PRO141)  (ALA308)   [view usage] : c.1.11.0 |TIM beta/alpha-barrel |Enolase C-terminal domain-like |automated matches |automated matches |Cytophaga hutchinsonii [TaxId: 269798]
 d2gdqb1 :   (TRP139)  (LEU311)   [view usage] : c.1.11.2 |TIM beta/alpha-barrel |Enolase C-terminal domain-like |D-glucarate dehydratase-like |Hypothetical protein YitF |Bacillus subtilis [TaxId: 1423]
 d2pgwb2 :   (GLU149)  (ALA316)   [view usage] : c.1.11.0 |TIM beta/alpha-barrel |Enolase C-terminal domain-like |automated matches |automated matches |Sinorhizobium meliloti [TaxId: 266834]
 d2oqha2 :   (LEU147)  (THR316)   [view usage] : c.1.11.0 |TIM beta/alpha-barrel |Enolase C-terminal domain-like |automated matches |automated matches |Streptomyces coelicolor [TaxId: 100226]
 d2gged1 :   (TRP139)  (LEU311)   [view usage] : c.1.11.2 |TIM beta/alpha-barrel |Enolase C-terminal domain-like |D-glucarate dehydratase-like |Hypothetical protein YitF |Bacillus subtilis [TaxId: 1423]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
   c.1