Protein Concepts Dictionary

Tableau information

Concept source:  d2nqha_  amino acid (a.a.) range (THR81)(GLN278)

nSSEs in this Concept: 13

String of secondary struct.elems. (SSEs) defining this concept: HEHEHEHHEHHEH

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	   (THR81)  (GLY102) H1
	  (SER104)  (PHE108) E2
	  (SER118)  (THR137) H3
	  (GLY139)  (GLU145) E4
	  (PHE158)  (VAL168) H5
	  (VAL174)  (THR180) E6
	  (THR180)  (GLY187) H7
	  (THR192)  (THR206) H8
	  (ARG213)  (ASP219) E9
	  (ASP242)  (ASP250) H10
	  (ASP250)  (ILE256) H11
	  (ILE256)  (THR262) E12
	  (TRP268)  (GLN278) H13

Orientation angles° of SSE-pairs; those in contact shown in bold font
          H1                                                                                         
E2      150.3°   E2                                                                                  
H3      -39.1°  155.2°   H3                                                                           
E4      125.4°  -27.9°  157.8°   E4                                                                    
H5      -80.2°  128.7°  -47.6°  153.6°   H5                                                             
E6       93.2°  -57.2°  122.5°  -35.6°  168.7°   E6                                                      
H7     -147.9°   31.1° -166.0°   36.3°  118.6°  -71.5°   H7                                               
H8     -104.3°  105.3°  -72.4°  128.6°  -25.1°  162.4°   94.0°   H8                                        
E9      103.3°  -47.3°  125.5°  -32.7°  160.4°  -14.5°  -68.2°  149.6°   E9                                 
H10     -55.4°  152.3°  -44.1°  151.1°  -35.9° -143.9°  124.4°  -53.0° -157.3°   H10                         
H11      80.4° -111.2°   45.1° -132.2°   50.5° -119.7°  131.7°   62.4° -110.5°  -76.1°   H11                  
E12     115.8°  -40.3°  120.8°  -43.6°  136.3°  -39.6°  -70.1°  126.7°  -25.2° -164.7°  -90.4°   E12           
H13     -73.6°  111.2°  -93.4°   95.3°  -85.5°  101.4°   81.7°  -86.0°  114.1°  -56.1° -132.2°  137.0°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±4.1°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d2nqha_ :    (THR81)  (GLN278)   [view usage] : c.1.15.1 |TIM beta/alpha-barrel |Xylose isomerase-like |Endonuclease IV |Endonuclease IV |Escherichia coli [TaxId: 562]
 d4k1gb_ :    (THR81)  (TRP268)   [view usage] : c.1.15.1 |TIM beta/alpha-barrel |Xylose isomerase-like |Endonuclease IV |automated matches |Escherichia coli K-12 [TaxId: 83333]
 d2nq9a_ :    (THR81)  (GLN278)   [view usage] : c.1.15.1 |TIM beta/alpha-barrel |Xylose isomerase-like |Endonuclease IV |Endonuclease IV |Escherichia coli [TaxId: 562]
 d1quma_ :    (THR81)  (GLN278)   [view usage] : c.1.15.1 |TIM beta/alpha-barrel |Xylose isomerase-like |Endonuclease IV |Endonuclease IV |Escherichia coli [TaxId: 562]
 d4k1ga_ :    (VAL80)  (GLN278)   [view usage] : c.1.15.1 |TIM beta/alpha-barrel |Xylose isomerase-like |Endonuclease IV |automated matches |Escherichia coli K-12 [TaxId: 83333]
 d1qtwa_ :    (VAL80)  (GLN278)   [view usage] : c.1.15.1 |TIM beta/alpha-barrel |Xylose isomerase-like |Endonuclease IV |Endonuclease IV |Escherichia coli [TaxId: 562]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
   c.1