Protein Concepts Dictionary

Tableau information

Concept source:  d1z7wa1  amino acid (a.a.) range (LYS46)(GLY215)

nSSEs in this Concept: 13

String of secondary struct.elems. (SSEs) defining this concept: HEHEHEHEHEHEH

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	   (LYS46)   (GLY61) H1
	   (GLU67)   (PRO73) E2
	   (ASN77)   (LYS89) H3
	   (LYS92)   (PRO98) E4
	  (THR103)  (GLY113) H5
	  (GLU115)  (ASP120) E6
	  (MET125)  (LYS138) H7
	  (ASN141)  (GLN147) E8
	  (ASN150)  (GLY170) H9
	  (ASP174)  (GLY179) E10
	  (GLY183)  (ASN197) H11
	  (LYS201)  (PRO207) E12
	  (PRO207)  (GLY215) H13

Orientation angles° of SSE-pairs; those in contact shown in bold font
          H1                                                                                         
E2      142.8°   E2                                                                                  
H3      -47.7° -169.4°   H3                                                                           
E4      134.7°  -16.5° -165.3°   E4                                                                    
H5      -38.7°  169.7°   13.4° -172.5°   H5                                                             
E6      118.4°  -29.3°  158.7°  -16.3°  156.8°   E6                                                      
H7      -21.1° -162.2°   28.2°  149.1°  -23.4°  133.9°   H7                                               
E8      139.4°  -35.5°  138.8°  -52.0°  134.5°  -62.4° -151.9°   E8                                        
H9      124.6°  -76.7°   95.2°  -92.2°   95.2° -105.8°  118.4°  -44.8°   H9                                 
E10     -90.4°  -87.3°  -94.7°  -71.6° -103.0°  -67.2°   86.1° -121.4°  139.0°   E10                         
H11      83.3°   95.5°   83.9° -110.4°   74.3°  112.6°  -89.3°   62.8°  -48.3° -172.7°   H11                  
E12    -108.9°  -71.3° -108.5°  -56.9° -118.8°  -56.9°  104.2° -103.7°  123.0°  -18.6°  166.5°   E12           
H13      46.7°  103.1°  -85.3°  105.4°  -72.1°   93.3°  -66.0°  -93.5° -102.6°  117.8°  -55.0°  129.7°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±5.7°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d2zpua_ :    (ASN69)  (LYS221)   [view usage] : c.79.1.1 |Tryptophan synthase beta subunit-like PLP-dependent enzymes |Tryptophan synthase beta subunit-like PLP-dependent enzymes |Tryptophan synthase beta subunit-like PLP-dependent enzymes |automated matches |Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
 d1z7ya1 :    (ALA46)  (GLY215)   [view usage] : c.79.1.1 |Tryptophan synthase beta subunit-like PLP-dependent enzymes |Tryptophan synthase beta subunit-like PLP-dependent enzymes |Tryptophan synthase beta subunit-like PLP-dependent enzymes |O-acetylserine sulfhydrylase (Cysteine synthase) |Thale cress (Arabidopsis thaliana) [TaxId: 3702]
 d4lmab_ :    (LYS46)  (GLY215)   [view usage] : c.79.1.0 |Tryptophan synthase beta subunit-like PLP-dependent enzymes |Tryptophan synthase beta subunit-like PLP-dependent enzymes |automated matches |automated matches |Microcystis aeruginosa [TaxId: 267872]
 d1j0aa_ :    (TYR60)  (GLY239)   [view usage] : c.79.1.1 |Tryptophan synthase beta subunit-like PLP-dependent enzymes |Tryptophan synthase beta subunit-like PLP-dependent enzymes |Tryptophan synthase beta subunit-like PLP-dependent enzymes |1-aminocyclopropane-1-carboxylate deaminase |Pyrococcus horikoshii [TaxId: 53953]
 d1v71a1 :    (ASN69)  (LYS221)   [view usage] : c.79.1.1 |Tryptophan synthase beta subunit-like PLP-dependent enzymes |Tryptophan synthase beta subunit-like PLP-dependent enzymes |Tryptophan synthase beta subunit-like PLP-dependent enzymes |Hypothetical protein C320.14 (SPCC320.14, SPCC330.15c) |Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
 d4lmaa_ :    (LYS46)  (GLY215)   [view usage] : c.79.1.0 |Tryptophan synthase beta subunit-like PLP-dependent enzymes |Tryptophan synthase beta subunit-like PLP-dependent enzymes |automated matches |automated matches |Microcystis aeruginosa [TaxId: 267872]
 d1rqxc_ :    (GLY49)  (VAL246)   [view usage] : c.79.1.1 |Tryptophan synthase beta subunit-like PLP-dependent enzymes |Tryptophan synthase beta subunit-like PLP-dependent enzymes |Tryptophan synthase beta subunit-like PLP-dependent enzymes |1-aminocyclopropane-1-carboxylate deaminase |Pseudomonas sp., strain ACP [TaxId: 306]
 d4aecb_ :   (LYS154)  (GLY323)   [view usage] : c.79.1.0 |Tryptophan synthase beta subunit-like PLP-dependent enzymes |Tryptophan synthase beta subunit-like PLP-dependent enzymes |automated matches |automated matches |Thale cress (Arabidopsis thaliana) [TaxId: 3702]
 d1z7wa1 :    (LYS46)  (GLY215)   [view usage] : c.79.1.1 |Tryptophan synthase beta subunit-like PLP-dependent enzymes |Tryptophan synthase beta subunit-like PLP-dependent enzymes |Tryptophan synthase beta subunit-like PLP-dependent enzymes |O-acetylserine sulfhydrylase (Cysteine synthase) |Thale cress (Arabidopsis thaliana) [TaxId: 3702]
 d2q3da_ :    (LYS44)  (GLY212)   [view usage] : c.79.1.0 |Tryptophan synthase beta subunit-like PLP-dependent enzymes |Tryptophan synthase beta subunit-like PLP-dependent enzymes |automated matches |automated matches |Mycobacterium tuberculosis [TaxId: 1773]
 d1j0ea_ :    (LYS51)  (ILE249)   [view usage] : c.79.1.1 |Tryptophan synthase beta subunit-like PLP-dependent enzymes |Tryptophan synthase beta subunit-like PLP-dependent enzymes |Tryptophan synthase beta subunit-like PLP-dependent enzymes |1-aminocyclopropane-1-carboxylate deaminase |Yeast (Hansenula saturnus) [TaxId: 4906]
 d3vc3f_ :    (ALA95)  (GLY264)   [view usage] : c.79.1.0 |Tryptophan synthase beta subunit-like PLP-dependent enzymes |Tryptophan synthase beta subunit-like PLP-dependent enzymes |automated matches |automated matches |Soybean (Glycine max) [TaxId: 3847]
 d1tdja1 :    (GLN77)  (ALA226)   [view usage] : c.79.1.1 |Tryptophan synthase beta subunit-like PLP-dependent enzymes |Tryptophan synthase beta subunit-like PLP-dependent enzymes |Tryptophan synthase beta subunit-like PLP-dependent enzymes |Threonine deaminase |Escherichia coli [TaxId: 562]
 d1o58a_ :    (ARG49)  (GLY201)   [view usage] : c.79.1.1 |Tryptophan synthase beta subunit-like PLP-dependent enzymes |Tryptophan synthase beta subunit-like PLP-dependent enzymes |Tryptophan synthase beta subunit-like PLP-dependent enzymes |O-acetylserine sulfhydrylase (Cysteine synthase) |Thermotoga maritima [TaxId: 2336]
 d3l6ca_ :    (LYS56)  (GLY224)   [view usage] : c.79.1.0 |Tryptophan synthase beta subunit-like PLP-dependent enzymes |Tryptophan synthase beta subunit-like PLP-dependent enzymes |automated matches |automated matches |Norway rat (Rattus norvegicus) [TaxId: 10116]
 d3bm5b_ :    (SER56)  (GLY226)   [view usage] : c.79.1.0 |Tryptophan synthase beta subunit-like PLP-dependent enzymes |Tryptophan synthase beta subunit-like PLP-dependent enzymes |automated matches |automated matches |Entamoeba histolytica [TaxId: 294381]
 d1ve1a1 :    (SER38)  (GLY209)   [view usage] : c.79.1.1 |Tryptophan synthase beta subunit-like PLP-dependent enzymes |Tryptophan synthase beta subunit-like PLP-dependent enzymes |Tryptophan synthase beta subunit-like PLP-dependent enzymes |O-acetylserine sulfhydrylase (Cysteine synthase) |Thermus thermophilus [TaxId: 274]
 d1f2da_ :    (LYS51)  (ILE249)   [view usage] : c.79.1.1 |Tryptophan synthase beta subunit-like PLP-dependent enzymes |Tryptophan synthase beta subunit-like PLP-dependent enzymes |Tryptophan synthase beta subunit-like PLP-dependent enzymes |1-aminocyclopropane-1-carboxylate deaminase |Yeast (Hansenula saturnus) [TaxId: 4906]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
  c.79