Protein Concepts Dictionary

Tableau information

Concept source:  d2z0ka_  amino acid (a.a.) range (SER6)(THR148)

nSSEs in this Concept: 13

String of secondary struct.elems. (SSEs) defining this concept: HEHEEHEHEHEEH

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	    (SER6)   (GLY18) H1
	   (HIS21)   (LEU27) E2
	   (THR33)   (VAL41) H3
	   (ILE48)   (GLY56) E4
	   (GLY59)   (LEU64) E5
	   (ASP72)   (GLY81) H6
	   (GLY82)   (GLN86) E7
	   (THR88)   (GLU94) H8
	  (PRO113)  (ASP117) E9
	  (ASP117)  (TYR123) H10
	  (PRO124)  (ALA129) E11
	  (ARG134)  (THR140) E12
	  (THR140)  (THR148) H13

Orientation angles° of SSE-pairs; those in contact shown in bold font
          H1                                                                                         
E2      169.2°   E2                                                                                  
H3      -70.9°  107.8°   H3                                                                           
E4       90.8°  -93.7°  153.6°   E4                                                                    
E5      -88.8°   84.2°  -38.9°  164.1°   E5                                                             
H6       43.0° -146.4°   95.8°  -58.6°  127.8°   H6                                                      
E7     -140.0°  -41.3°   69.3°  124.9°  -62.0°  138.9°   E7                                               
H8       46.8° -141.8°  -56.0°   97.6°  -93.7°   42.1° -105.0°   H8                                        
E9      -98.6°   71.5°  -67.6°  135.9°  -28.9°  141.4°  -69.5° -120.0°   E9                                 
H10     -71.6°  106.6°   -2.7° -156.0°   36.3°  -97.8°   68.8°  -58.5°   64.9°   H10                         
E11     136.2°  -53.9°  122.9°  -58.7°  129.3°  -93.3°   67.5° -102.7°  125.3°  124.3°   E11                  
E12      20.0°  149.2°  -69.4°   99.8°  -75.3°   61.7° -135.3°   63.6°  -79.7°  -69.0°  154.2°   E12           
H13      90.4°  -97.9°  131.5°  -26.2°  169.6°  -48.7°  113.4°   78.3°  160.8° -134.2°   48.0°  106.4°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±4.3°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d2cx5a_ :     (SER4)  (GLY149)   [view usage] : d.116.1.0 |YbaK/ProRS associated domain |YbaK/ProRS associated domain |automated matches |automated matches |Thermus thermophilus [TaxId: 274]
 d2z0ka_ :     (SER6)  (THR148)   [view usage] : d.116.1.0 |YbaK/ProRS associated domain |YbaK/ProRS associated domain |automated matches |automated matches |Thermus thermophilus HB8 [TaxId: 300852]
 d1wdva_ :     (GLU3)  (GLY144)   [view usage] : d.116.1.1 |YbaK/ProRS associated domain |YbaK/ProRS associated domain |YbaK/ProRS associated domain |Hypothetical protein APE2540 |Aeropyrum pernix [TaxId: 56636]
 d1vkia_ :     (THR8)  (GLY159)   [view usage] : d.116.1.1 |YbaK/ProRS associated domain |YbaK/ProRS associated domain |YbaK/ProRS associated domain |Hypothetical protein Atu3699 |Agrobacterium tumefaciens, strain C58 [TaxId: 358]
 d3rijb_ :     (SER4)  (THR148)   [view usage] : d.116.1.0 |YbaK/ProRS associated domain |YbaK/ProRS associated domain |automated matches |automated matches |Thermus thermophilus HB8 [TaxId: 300852]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
 d.116