Protein Concepts Dictionary

Tableau information

Concept source:  d1tf1a_  amino acid (a.a.) range (GLY18)(LEU182)

nSSEs in this Concept: 13

String of secondary struct.elems. (SSEs) defining this concept: HEEEEHHHEEEHH

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	   (GLY18)   (SER28) H1
	   (THR31)   (ARG37) E2
	   (GLU41)   (ILE45) E3
	   (ILE45)   (LYS51) E4
	   (GLY61)   (PRO65) E5
	   (SER69)   (LEU79) H6
	   (GLU81)   (ILE87) H7
	  (PRO105)  (LEU117) H8
	  (GLY118)  (GLU124) E9
	  (GLY129)  (ASP139) E10
	  (VAL145)  (ILE150) E11
	  (PRO153)  (THR158) H12
	  (VAL163)  (LEU182) H13

Orientation angles° of SSE-pairs; those in contact shown in bold font
          H1                                                                                         
E2      133.1°   E2                                                                                  
E3     -100.2°  126.6°   E3                                                                           
E4      -35.4° -168.5°  -64.8°   E4                                                                    
E5       62.4°  -74.5°  148.8°   94.6°   E5                                                             
H6      122.0°  -43.4°  111.7°  135.5°  -65.6°   H6                                                      
H7      -81.7°   91.5°   99.4°  -87.2° -103.0°  134.5°   H7                                               
H8      101.4° -115.4°   35.1°   73.0°  118.9°  -82.4°  134.4°   H8                                        
E9      -54.6°  108.2° -104.2°  -66.6°   86.9°  143.5°  -27.2°  133.6°   E9                                 
E10     150.1°  -53.4°   80.3°  134.7° -102.1°  -36.5°  128.0°  -62.0°  154.7°   E10                         
E11     -28.9°  158.8°  -73.2°  -12.4°   91.1°  143.1°  -76.4°   85.1°  -54.5°  147.0°   E11                  
H12      83.0° -100.6°   81.3°   79.0°  -71.4°  -57.3° -164.5°   47.6° -137.6°   67.4°   89.1°   H12           
H13     170.4°  -56.4°   70.2°  135.0° -125.9°  -63.3°   99.9°  -70.6°  126.9°  -30.6°  142.1°   94.9°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±4.1°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d2o9aa_ :    (HIS12)  (MET179)   [view usage] : d.110.2.2 |Profilin-like |GAF domain-like |IclR ligand-binding domain-like |Transcriptional regulator IclR, C-terminal domain |Escherichia coli [TaxId: 562]
 d1td5a_ :    (LEU15)  (MSE179)   [view usage] : d.110.2.2 |Profilin-like |GAF domain-like |IclR ligand-binding domain-like |Transcriptional regulator IclR, C-terminal domain |Escherichia coli [TaxId: 562]
 d1tf1a_ :    (GLY18)  (LEU182)   [view usage] : d.110.2.2 |Profilin-like |GAF domain-like |IclR ligand-binding domain-like |Transcriptional regulator AllR, C-terminal domain |Escherichia coli [TaxId: 562]
 d2o99c_ :    (LEU15)  (SER182)   [view usage] : d.110.2.2 |Profilin-like |GAF domain-like |IclR ligand-binding domain-like |Transcriptional regulator IclR, C-terminal domain |Escherichia coli [TaxId: 562]
 d1td5c_ :     (SER4)  (GLY178)   [view usage] : d.110.2.2 |Profilin-like |GAF domain-like |IclR ligand-binding domain-like |Transcriptional regulator IclR, C-terminal domain |Escherichia coli [TaxId: 562]
 d1tf1d_ :    (GLY18)  (LEU182)   [view usage] : d.110.2.2 |Profilin-like |GAF domain-like |IclR ligand-binding domain-like |Transcriptional regulator AllR, C-terminal domain |Escherichia coli [TaxId: 562]
 d1td5d_ :    (LEU15)  (GLY178)   [view usage] : d.110.2.2 |Profilin-like |GAF domain-like |IclR ligand-binding domain-like |Transcriptional regulator IclR, C-terminal domain |Escherichia coli [TaxId: 562]
 d1tf1c_ :    (MET21)  (LYS183)   [view usage] : d.110.2.2 |Profilin-like |GAF domain-like |IclR ligand-binding domain-like |Transcriptional regulator AllR, C-terminal domain |Escherichia coli [TaxId: 562]
 d2o9ad_ :     (ARG5)  (ARG180)   [view usage] : d.110.2.2 |Profilin-like |GAF domain-like |IclR ligand-binding domain-like |Transcriptional regulator IclR, C-terminal domain |Escherichia coli [TaxId: 562]
 d3obfb_ :   (GLU129)  (GLY297)   [view usage] : d.110.2.0 |Profilin-like |GAF domain-like |automated matches |automated matches |Arthrobacter aurescens [TaxId: 290340]
 d1tf1b_ :    (MET21)  (LYS183)   [view usage] : d.110.2.2 |Profilin-like |GAF domain-like |IclR ligand-binding domain-like |Transcriptional regulator AllR, C-terminal domain |Escherichia coli [TaxId: 562]
 d2o99d_ :     (ASN6)  (GLY178)   [view usage] : d.110.2.2 |Profilin-like |GAF domain-like |IclR ligand-binding domain-like |Transcriptional regulator IclR, C-terminal domain |Escherichia coli [TaxId: 562]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
 d.110