Protein Concepts Dictionary

Tableau information

Concept source:  d1gp5a_  amino acid (a.a.) range (TRP139)(GLN347)

nSSEs in this Concept: 13

String of secondary struct.elems. (SSEs) defining this concept: EHHEEEEEEHEEH

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	  (TRP139)  (PRO149) E1
	  (ASP164)  (GLY192) H2
	  (ARG197)  (GLY203) H3
	  (LEU208)  (GLN222) E4
	  (ALA231)  (ALA237) E5
	  (ALA237)  (HIS243) E6
	  (GLY248)  (TYR253) E7
	  (LYS256)  (CYS262) E8
	  (ASP265)  (ILE271) E9
	  (ASP273)  (ASN280) H10
	  (TYR283)  (LYS294) E11
	  (VAL297)  (CYS305) E12
	  (THR333)  (GLN347) H13

Orientation angles° of SSE-pairs; those in contact shown in bold font
          E1                                                                                         
H2      -77.5°   H2                                                                                  
H3     -101.4°  124.5°   H3                                                                           
E4      166.2°  109.8°   84.2°   E4                                                                    
E5       -7.8°  -85.0°  -95.4° -162.3°   E5                                                             
E6      124.0°  132.7°  -94.3°  -42.4°  120.2°   E6                                                      
E7      -76.9°  -11.4°  113.2°  112.6°  -83.9° -142.2°   E7                                               
E8       67.4°  128.5°  -99.2°  -99.4°   63.1°  -57.1°  135.7°   E8                                        
E9      -84.0°  -52.9°   71.7°  109.8°  -86.8°  151.3°   41.5° -148.0°   E9                                 
H10     -63.0°  -17.9°  114.7° -126.2°  -70.0° -148.9°  -13.9°  123.8°  -45.2°   H10                         
E11     135.9°  143.7°  -70.4°  -34.4°  129.2°   25.5°  146.9°  -71.3° -129.1° -160.6°   E11                  
E12     -31.8°  -56.9°  -93.5°  161.5°   36.1°  155.8°  -51.6°   99.0°  -52.6°   39.2° -158.9°   E12           
H13    -166.8°   92.8°  -76.6°   26.8°  168.6°  -69.1°   91.8° -125.7°   83.0°  105.6°  -56.1°  135.0°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±4.1°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d2brta_ :   (ASP141)  (GLU346)   [view usage] : b.82.2.1 |Double-stranded beta-helix |Clavaminate synthase-like |Penicillin synthase-like |automated matches |Thale cress (Arabidopsis thaliana) [TaxId: 3702]
 d1gp5a_ :   (TRP139)  (GLN347)   [view usage] : b.82.2.1 |Double-stranded beta-helix |Clavaminate synthase-like |Penicillin synthase-like |Anthocyanidin synthase |Thale cress (Arabidopsis thaliana) [TaxId: 3702]
 d1gp4a_ :   (PHE143)  (LYS345)   [view usage] : b.82.2.1 |Double-stranded beta-helix |Clavaminate synthase-like |Penicillin synthase-like |Anthocyanidin synthase |Thale cress (Arabidopsis thaliana) [TaxId: 3702]
 d1gp6a_ :   (ASP141)  (LEU350)   [view usage] : b.82.2.1 |Double-stranded beta-helix |Clavaminate synthase-like |Penicillin synthase-like |Anthocyanidin synthase |Thale cress (Arabidopsis thaliana) [TaxId: 3702]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
  b.82