Tableau information
Concept source: d2byja1 amino acid (a.a.) range (ASP286)(PHE439)
nSSEs in this Concept: 13
String of secondary struct.elems. (SSEs) defining this concept: EHEHHHHEEHEEH
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(ASP286) (GLY291) E1
(GLY291) (GLY296) H2
(PRO300) (CYS306) E3
(ASP307) (THR313) H4
(ASN326) (GLU341) H5
(LEU345) (LYS351) H6
(LEU352) (LYS362) H7
(THR369) (LYS374) E8
(LEU377) (LYS383) E9
(ALA390) (GLY401) H10
(GLY401) (THR407) E11
(ASP410) (PRO416) E12
(GLU422) (PHE439) H13
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
H2 -51.7° H2
E3 174.7° 123.2° E3
H4 -67.7° -102.9° 116.7° H4
H5 101.4° 84.1° -75.7° 156.2° H5
H6 86.9° 114.7° -94.7° 103.3° 53.8° H6
H7 74.8° 115.4° -108.1° 83.9° 72.6° -20.0° H7
E8 -109.3° -67.8° 67.8° -98.0° -105.6° -157.0° -175.8° E8
E9 78.0° 121.3° -105.3° 79.4° 77.6° 24.0° -6.9° 170.8° E9
H10 -53.7° -2.4° 121.2° -105.2° 82.1° 114.2° 115.9° -67.3° 121.9° H10
E11 134.7° 160.3° -50.5° 71.1° -109.1° -85.0° -83.2° 94.0° -76.8° -160.5° E11
E12 -84.9° -35.3° 90.6° -111.4° 87.6° 137.8° 147.8° -34.5° 154.5° -34.2° 128.1° E12
H13 77.8° 126.8° -106.5° 66.1° -91.4° -37.6° -20.3° 159.4° -14.0° 128.0° -69.0° 162.1°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±6.8° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d1vefa1 : (ASP248) (ALA395) [view usage] : c.67.1.4 |PLP-dependent transferase-like |PLP-dependent transferases |GABA-aminotransferase-like |Acetylornithine/acetyl-lysine aminotransferase ArgD |Thermus thermophilus [TaxId: 274]
d2byla1 : (ASP286) (PHE439) [view usage] : c.67.1.4 |PLP-dependent transferase-like |PLP-dependent transferases |GABA-aminotransferase-like |Ornithine aminotransferase |Human (Homo sapiens) [TaxId: 9606]
d1gbna_ : (ASP286) (SER438) [view usage] : c.67.1.4 |PLP-dependent transferase-like |PLP-dependent transferases |GABA-aminotransferase-like |Ornithine aminotransferase |Human (Homo sapiens) [TaxId: 9606]
d3cq5a_ : (LEU220) (ASN365) [view usage] : c.67.1.0 |PLP-dependent transferase-like |PLP-dependent transferases |automated matches |automated matches |Corynebacterium glutamicum
d3fkda_ : (ASN188) (LYS341) [view usage] : c.67.1.0 |PLP-dependent transferase-like |PLP-dependent transferases |automated matches |automated matches |Porphyromonas gingivalis [TaxId: 837]
d2eh6a_ : (ASP235) (ILE374) [view usage] : c.67.1.0 |PLP-dependent transferase-like |PLP-dependent transferases |automated matches |automated matches |Aquifex aeolicus [TaxId: 224324]
d4e3qc_ : (ASP279) (VAL452) [view usage] : c.67.1.0 |PLP-dependent transferase-like |PLP-dependent transferases |automated matches |automated matches |Vibrio fluvialis [TaxId: 676]
d2byja1 : (ASP286) (PHE439) [view usage] : c.67.1.4 |PLP-dependent transferase-like |PLP-dependent transferases |GABA-aminotransferase-like |Ornithine aminotransferase |Human (Homo sapiens) [TaxId: 9606]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
c.67