Protein Concepts Dictionary

Tableau information

Concept source:  d2afif_  amino acid (a.a.) range (LYS84)(GLU270)

nSSEs in this Concept: 13

String of secondary struct.elems. (SSEs) defining this concept: EHEHHEHEHEHHH

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	   (LYS84)   (GLY90) E1
	   (GLY99)  (GLY113) H2
	  (ASP120)  (VAL126) E3
	  (CYS132)  (ALA136) H4
	  (ALA136)  (GLU141) H5
	  (GLN145)  (CYS151) E6
	  (MET156)  (TYR171) H7
	  (GLY175)  (SER186) E8
	  (GLU192)  (GLY204) H9
	  (GLY204)  (ASN215) E10
	  (ASN215)  (ARG224) H11
	  (ASP231)  (VAL248) H12
	  (THR260)  (GLU270) H13

Orientation angles° of SSE-pairs; those in contact shown in bold font
          E1                                                                                         
H2      142.3°   H2                                                                                  
E3      -25.7°  161.6°   E3                                                                           
H4      162.5°   24.0° -171.8°   H4                                                                    
H5      118.8°  -39.5° -143.1°  -44.2°   H5                                                             
E6      -72.8°  141.7°  -47.5°  124.3° -154.9°   E6                                                      
H7       93.3°  -54.4°  119.0°  -69.2°  -29.2° -163.4°   H7                                               
E8      -98.1°  115.8°  -72.4°   99.4°  139.3°  -26.0° -168.3°   E8                                        
H9       75.7°  -74.6°  100.9°  -86.9°  -43.3°  142.9°  -20.5°  165.3°   H9                                 
E10     -98.5°   99.9°  -77.2°   96.6°  138.8°  -49.1°  145.0°  -35.6°  157.2°   E10                         
H11     -85.5°   68.1°  -93.7°   89.8°   90.2° -113.6°   73.3° -110.4°   82.6°  -74.9°   H11                  
H12      75.6°  -80.5°   99.0°  -88.1°  -44.1°  134.5°  -29.5°  152.9°  -12.9° -169.2°  -95.5°   H12           
H13    -122.4°   94.1°  -97.2°   74.6°  113.5°  -49.7°  142.4°  -25.9°  152.3°  -48.4° -117.1°  142.4°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±4.1°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d1xd8a_ :    (LYS84)  (GLY272)   [view usage] : c.37.1.10 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Nitrogenase iron protein-like |Nitrogenase iron protein |Azotobacter vinelandii [TaxId: 354]
 d1xdba_ :    (LYS84)  (GLY272)   [view usage] : c.37.1.10 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Nitrogenase iron protein-like |Nitrogenase iron protein |Azotobacter vinelandii [TaxId: 354]
 d1nipa_ :    (LYS84)  (GLY272)   [view usage] : c.37.1.10 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Nitrogenase iron protein-like |Nitrogenase iron protein |Azotobacter vinelandii [TaxId: 354]
 d2afif_ :    (LYS84)  (GLU270)   [view usage] : c.37.1.10 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Nitrogenase iron protein-like |Nitrogenase iron protein |Azotobacter vinelandii [TaxId: 354]
 d1cp2a_ :    (ARG81)  (MET266)   [view usage] : c.37.1.10 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Nitrogenase iron protein-like |Nitrogenase iron protein |Clostridium pasteurianum [TaxId: 1501]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
  c.37