Protein Concepts Dictionary

Tableau information

Concept source:  d4r31d_  amino acid (a.a.) range (LYS18)(TYR139)

nSSEs in this Concept: 13

String of secondary struct.elems. (SSEs) defining this concept: EHEEEHEEEEHEH

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	   (LYS18)   (GLY24) E1
	   (ARG28)   (GLN34) H2
	   (LYS38)   (ALA43) E3
	   (GLU47)   (GLU56) E4
	   (GLU58)   (SER64) E5
	   (GLY69)   (GLY83) H6
	   (GLY85)   (GLY91) E7
	   (THR93)   (GLN97) E8
	  (ASP104)  (THR108) E9
	  (THR109)  (LEU114) E10
	  (GLY116)  (ALA122) H11
	  (GLU125)  (ALA130) E12
	  (SER133)  (TYR139) H13

Orientation angles° of SSE-pairs; those in contact shown in bold font
          E1                                                                                         
H2      134.5°   H2                                                                                  
E3      -63.6°  161.9°   E3                                                                           
E4      135.8°    4.9°  159.7°   E4                                                                    
E5      -24.2°  158.4°  -39.6°  158.7°   E5                                                             
H6      164.2°  -45.3°  117.7°  -45.9°  155.1°   H6                                                      
E7      -24.7°  109.8°  -88.3°  111.3°  -48.8°  148.7°   E7                                               
E8       74.1°  -88.5°   98.4°  -84.9°   80.3° -119.8°  -68.6°   E8                                        
E9      122.2° -100.7°   62.1°  -97.7°   98.8°  -66.7°  144.7°   95.5°   E9                                 
E10      47.9° -177.5°  -15.8° -174.5°   24.1° -132.2°   72.5°   93.2°  -77.3°   E10                         
H11     150.0°  -70.3°   92.5°  -67.3°  128.4°  -43.1° -161.6°  -93.1°  -30.5° -107.8°   H11                  
E12    -102.2°   47.4° -139.6°   52.3° -121.7°   66.1°  -82.9° -114.4° -132.1°  133.0°  107.8°   E12           
H13     -66.6°   69.8° -127.4°   72.7°  -90.4°  105.8°  -43.2°  -83.1° -170.4°  112.2°  140.0°   42.2°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±4.1°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d1z33a_ :    (THR15)  (ASN145)   [view usage] : c.56.2.1 |Phosphorylase/hydrolase-like |Purine and uridine phosphorylases |Purine and uridine phosphorylases |automated matches |Trichomonas vaginalis [TaxId: 5722]
 d4r31c_ :    (LYS18)  (GLY146)   [view usage] : c.56.2.0 |Phosphorylase/hydrolase-like |Purine and uridine phosphorylases |automated matches |automated matches |Actinobacillus succinogenes [TaxId: 339671]
 d4r31e_ :    (LYS18)  (GLY146)   [view usage] : c.56.2.0 |Phosphorylase/hydrolase-like |Purine and uridine phosphorylases |automated matches |automated matches |Actinobacillus succinogenes [TaxId: 339671]
 d1jdsc_ :    (ARG16)  (ASN146)   [view usage] : c.56.2.1 |Phosphorylase/hydrolase-like |Purine and uridine phosphorylases |Purine and uridine phosphorylases |5'-deoxy-5'-methylthioadenosine phosphorylase |Sulfolobus solfataricus [TaxId: 2287]
 d1k3fa_ :    (THR20)  (ILE147)   [view usage] : c.56.2.1 |Phosphorylase/hydrolase-like |Purine and uridine phosphorylases |Purine and uridine phosphorylases |Uridine phosphorylase |Escherichia coli [TaxId: 562]
 d4r31b_ :    (LYS18)  (GLY146)   [view usage] : c.56.2.0 |Phosphorylase/hydrolase-like |Purine and uridine phosphorylases |automated matches |automated matches |Actinobacillus succinogenes [TaxId: 339671]
 d1lx7a_ :    (THR20)  (SER146)   [view usage] : c.56.2.1 |Phosphorylase/hydrolase-like |Purine and uridine phosphorylases |Purine and uridine phosphorylases |Uridine phosphorylase |Escherichia coli [TaxId: 562]
 d1nw4a_ :    (PRO17)  (ASN146)   [view usage] : c.56.2.1 |Phosphorylase/hydrolase-like |Purine and uridine phosphorylases |Purine and uridine phosphorylases |Putative uridine phosphorylase |Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
 d3pnsa_ :    (THR24)  (GLY152)   [view usage] : c.56.2.1 |Phosphorylase/hydrolase-like |Purine and uridine phosphorylases |Purine and uridine phosphorylases |automated matches |Vibrio cholerae [TaxId: 243277]
 d4r31a_ :    (LYS18)  (TYR139)   [view usage] : c.56.2.0 |Phosphorylase/hydrolase-like |Purine and uridine phosphorylases |automated matches |automated matches |Actinobacillus succinogenes [TaxId: 339671]
 d3o6vb_ :    (THR24)  (GLY152)   [view usage] : c.56.2.1 |Phosphorylase/hydrolase-like |Purine and uridine phosphorylases |Purine and uridine phosphorylases |automated matches |Vibrio cholerae [TaxId: 243277]
 d4r31d_ :    (LYS18)  (TYR139)   [view usage] : c.56.2.0 |Phosphorylase/hydrolase-like |Purine and uridine phosphorylases |automated matches |automated matches |Actinobacillus succinogenes [TaxId: 339671]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
  c.56