Protein Concepts Dictionary

Tableau information

Concept source:  d1ngga1  amino acid (a.a.) range (SER40)(GLY166)

nSSEs in this Concept: 13

String of secondary struct.elems. (SSEs) defining this concept: EEHHHHHEEEHEH

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	   (SER40)   (ASP46) E1
	   (GLU48)   (GLY52) E2
	   (GLY52)   (GLN58) H3
	   (ASN62)   (THR66) H4
	   (ASP69)   (ILE74) H5
	   (ARG77)   (ASP80) H6
	   (ASP80)   (TRP90) H7
	   (PHE92)   (ASN96) E8
	  (ARG100)  (GLU106) E9
	  (GLU110)  (TYR115) E10
	  (TYR115)  (GLY136) H11
	  (ALA142)  (PRO147) E12
	  (SER153)  (GLY166) H13

Orientation angles° of SSE-pairs; those in contact shown in bold font
          E1                                                                                         
E2      166.1°   E2                                                                                  
H3       67.5° -102.2°   H3                                                                           
H4      134.8°  -59.1° -138.5°   H4                                                                    
H5      100.1°  -92.0°  108.8°  -43.6°   H5                                                             
H6      -97.6°   68.5°  -51.8°  127.7°  144.8°   H6                                                      
H7      -54.7°  112.3°   57.0°  161.0° -153.4°  -47.5°   H7                                               
E8       95.1°  -97.2°  109.2°  -46.8°   -5.5° -149.1° -149.1°   E8                                        
E9      -45.0°  123.5°   67.8° -153.7° -144.6°  -62.4°   15.5°  139.3°   E9                                 
E10     160.3°  -33.0° -119.6°   27.7°  -60.5°  100.7°  145.0°  -65.4°  153.5°   E10                         
H11     103.1°  -74.7° -124.8°  -88.0° -126.3°   78.1°   73.1°  126.0°   69.5°   87.7°   H11                  
E12    -106.6°   67.5°  -43.5°  -96.5°  -84.1°   61.7°   94.9°  -87.7°  108.7°  -76.3°  132.2°   E12           
H13      54.8° -124.9°  109.4°  111.4°  117.5°  -97.6°  -57.7°  112.7°  -43.4°  128.8°  -50.3°  152.0°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±4.1°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d4io8a1 :    (SER40)  (GLY166)   [view usage] : c.55.1.1 |Ribonuclease H-like motif |Actin-like ATPase domain |Actin/HSP70 |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d1ngha1 :    (SER40)  (GLY166)   [view usage] : c.55.1.1 |Ribonuclease H-like motif |Actin-like ATPase domain |Actin/HSP70 |Heat shock protein 70kDa, ATPase fragment |Cow (Bos taurus) [TaxId: 9913]
 d3iucc1 :    (ARG60)  (GLY192)   [view usage] : c.55.1.0 |Ribonuclease H-like motif |Actin-like ATPase domain |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d1kaya1 :    (SER40)  (GLY166)   [view usage] : c.55.1.1 |Ribonuclease H-like motif |Actin-like ATPase domain |Actin/HSP70 |Heat shock protein 70kDa, ATPase fragment |Cow (Bos taurus) [TaxId: 9913]
 d1ngga1 :    (SER40)  (GLY166)   [view usage] : c.55.1.1 |Ribonuclease H-like motif |Actin-like ATPase domain |Actin/HSP70 |Heat shock protein 70kDa, ATPase fragment |Cow (Bos taurus) [TaxId: 9913]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
  c.55