Protein Concepts Dictionary

Tableau information

Concept source:  d3is9a1  amino acid (a.a.) range (TYR232)(ASN418)

nSSEs in this Concept: 13

String of secondary struct.elems. (SSEs) defining this concept: EEHHHEEEEHEHE

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	  (TYR232)  (PRO236) E1
	  (ASP237)  (VAL241) E2
	  (VAL254)  (SER268) H3
	  (ARG277)  (LEU283) H4
	  (THR296)  (PRO313) H5
	  (PRO313)  (TYR318) E6
	  (LEU325)  (LYS331) E7
	  (GLN336)  (TYR342) E8
	  (LYS350)  (ARG356) E9
	  (ASP364)  (ILE382) H10
	  (LYS385)  (LEU391) E11
	  (GLN394)  (TYR405) H12
	  (GLU413)  (ASN418) E13

Orientation angles° of SSE-pairs; those in contact shown in bold font
          E1                                                                                         
E2      169.0°   E2                                                                                  
H3      -25.2° -163.7°   H3                                                                           
H4     -149.5°   35.7° -144.1°   H4                                                                    
H5       23.5° -151.6°   44.5° -128.9°   H5                                                             
E6      -61.4°  129.4°   43.6° -100.6°   66.0°   E6                                                      
E7      142.0°  -31.9°  140.0°  -67.4°  149.5° -142.5°   E7                                               
E8      -18.6°  161.8°   33.3°  130.9°   13.2°   53.7°  158.6°   E8                                        
E9     -149.3°   38.0° -125.7°  -53.4°  168.5° -102.8°  -40.8°  155.4°   E9                                 
H10     -55.9°  124.9°  -67.4°   94.3°  -35.2°  -60.3°  150.9°  -37.7°  142.2°   H10                         
E11     105.0°  -69.8°  104.1° -105.1°  120.5°  132.1°  -37.9°  123.3°  -64.6°  152.5°   E11                  
H12    -130.4°   60.4° -110.1°   39.5° -127.5°  -69.0°   82.1° -119.0°   45.1°  -98.1°  109.3°   H12           
E13      99.9°  -70.9°  111.3° -104.4°  105.5°  152.5°  -44.7°  114.0°  -83.3°  128.1°  -28.1°  126.8°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±4.1°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d3drsa2 :   (GLY231)  (ASN418)   [view usage] : e.8.1.2 |DNA/RNA polymerases |DNA/RNA polymerases |Reverse transcriptase |HIV-1 reverse transcriptase |Human immunodeficiency virus type 1 [TaxId: 11676]
 d1rtda2 :   (TYR232)  (ASN418)   [view usage] : e.8.1.2 |DNA/RNA polymerases |DNA/RNA polymerases |Reverse transcriptase |HIV-1 reverse transcriptase |Human immunodeficiency virus type 1 [TaxId: 11676]
 d4mfba1 :   (TYR232)  (ASN418)   [view usage] : e.8.1.2 |DNA/RNA polymerases |DNA/RNA polymerases |Reverse transcriptase |HIV-1 reverse transcriptase |Human immunodeficiency virus type 1 [TaxId: 11676]
 d1hpza2 :   (GLY231)  (ASN418)   [view usage] : e.8.1.2 |DNA/RNA polymerases |DNA/RNA polymerases |Reverse transcriptase |HIV-1 reverse transcriptase |Human immunodeficiency virus type 1 [TaxId: 11676]
 d3is9a1 :   (TYR232)  (ASN418)   [view usage] : e.8.1.2 |DNA/RNA polymerases |DNA/RNA polymerases |Reverse transcriptase |HIV-1 reverse transcriptase |Human immunodeficiency virus type 1 [TaxId: 11676]
 d1n5ya2 :   (TYR232)  (ASN418)   [view usage] : e.8.1.2 |DNA/RNA polymerases |DNA/RNA polymerases |Reverse transcriptase |HIV-1 reverse transcriptase |Human immunodeficiency virus type 1 [TaxId: 11676]
 d2ze2a1 :   (TYR232)  (ASN418)   [view usage] : e.8.1.2 |DNA/RNA polymerases |DNA/RNA polymerases |Reverse transcriptase |HIV-1 reverse transcriptase |Human immunodeficiency virus type 1 [TaxId: 11676]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
   e.8