Protein Concepts Dictionary

Tableau information

Concept source:  d2ebda1  amino acid (a.a.) range (GLY2)(ARG167)

nSSEs in this Concept: 13

String of secondary struct.elems. (SSEs) defining this concept: EEHHEHEHEHEHE

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	    (GLY2)   (PRO13) E1
	   (LYS14)   (ASN19) E2
	   (ASN19)   (VAL26) H3
	   (SER29)   (GLY38) H4
	   (LYS40)   (ALA45) E5
	   (THR49)   (ASN66) H6
	   (ASP73)   (THR79) E7
	   (THR89)   (LEU97) H8
	  (VAL102)  (SER108) E9
	  (GLY113)  (GLY128) H10
	  (ASN132)  (ALA138) E11
	  (ARG150)  (PHE156) H12
	  (GLY161)  (ARG167) E13

Orientation angles° of SSE-pairs; those in contact shown in bold font
          E1                                                                                         
E2       76.4°   E2                                                                                  
H3       55.4°  -65.9°   H3                                                                           
H4      174.4°  101.3°  119.0°   H4                                                                    
E5       87.7°  142.8°   77.3°   91.2°   E5                                                             
H6      137.6° -113.5° -167.0°  -48.0°  101.0°   H6                                                      
E7      -45.5°   31.7°  -47.7°  131.5° -120.2°  138.0°   E7                                               
H8       92.0° -139.1°  136.9°  -93.0°   73.7°  -52.6°  129.0°   H8                                        
E9      -68.3°   11.9°  -54.4°  108.6° -131.6°  125.3°  -22.9°  144.4°   E9                                 
H10     148.3° -134.9°  125.3°  -33.6°   64.2°  -45.1°  163.3°  -67.2°  141.5°   H10                         
E11     -32.8°   44.2°  -46.0°  144.0° -111.2°  143.0°  -12.7°  119.7°  -35.6°  171.2°   E11                  
H12    -120.0° -140.7°  153.3°  -65.0°   76.2°   29.7° -151.7°  -28.0°  152.2°  -42.2° -145.9°   H12           
E13     164.3° -119.1° -126.0°  -17.9°  -78.0°  -41.9°  149.3°  -77.8°  126.5°  -16.0°  161.5°   50.4°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±5.2°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d3h78a1 :     (ASN2)  (ALA170)   [view usage] : c.95.1.0 |Thiolase-like |Thiolase-like |automated matches |automated matches |Pseudomonas aeruginosa [TaxId: 208964]
 d1mzja1 :    (GLY16)  (PRO177)   [view usage] : c.95.1.2 |Thiolase-like |Thiolase-like |Chalcone synthase-like |Priming beta-ketosynthase from the r1128 polyketide biosynthetic pathway |Streptomyces sp. r1128 [TaxId: 140437]
 d1mzjb1 :    (LEU15)  (PRO177)   [view usage] : c.95.1.2 |Thiolase-like |Thiolase-like |Chalcone synthase-like |Priming beta-ketosynthase from the r1128 polyketide biosynthetic pathway |Streptomyces sp. r1128 [TaxId: 140437]
 d3h78b1 :     (ASN2)  (ALA170)   [view usage] : c.95.1.0 |Thiolase-like |Thiolase-like |automated matches |automated matches |Pseudomonas aeruginosa [TaxId: 208964]
 d1hn9a1 :     (TYR2)  (GLY160)   [view usage] : c.95.1.2 |Thiolase-like |Thiolase-like |Chalcone synthase-like |Ketoacyl-ACP synthase III (FabH) |Escherichia coli [TaxId: 562]
 d1ebla1 :     (TYR2)  (ALA168)   [view usage] : c.95.1.2 |Thiolase-like |Thiolase-like |Chalcone synthase-like |Ketoacyl-ACP synthase III (FabH) |Escherichia coli [TaxId: 562]
 d3gwaa1 :     (ARG9)  (ALA177)   [view usage] : c.95.1.0 |Thiolase-like |Thiolase-like |automated matches |automated matches |Burkholderia pseudomallei [TaxId: 320372]
 d1zowa1 :     (LYS6)  (ILE165)   [view usage] : c.95.1.0 |Thiolase-like |Thiolase-like |automated matches |automated matches |Staphylococcus aureus [TaxId: 196620]
 d2ebda1 :     (GLY2)  (ARG167)   [view usage] : c.95.1.0 |Thiolase-like |Thiolase-like |automated matches |automated matches |Aquifex aeolicus [TaxId: 224324]
 d2x3ea1 :     (ALA4)  (GLY159)   [view usage] : c.95.1.0 |Thiolase-like |Thiolase-like |automated matches |automated matches |Pseudomonas aeruginosa [TaxId: 287]
 d2ebdb1 :     (GLY2)  (ARG167)   [view usage] : c.95.1.0 |Thiolase-like |Thiolase-like |automated matches |automated matches |Aquifex aeolicus [TaxId: 224324]
 d3h76a1 :     (ASN2)  (ALA170)   [view usage] : c.95.1.0 |Thiolase-like |Thiolase-like |automated matches |automated matches |Pseudomonas aeruginosa [TaxId: 208964]
 d3gwea1 :    (ASP14)  (ALA174)   [view usage] : c.95.1.0 |Thiolase-like |Thiolase-like |automated matches |automated matches |Burkholderia pseudomallei [TaxId: 320372]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
  c.95