Protein Concepts Dictionary

Tableau information

Concept source:  d2h66e_  amino acid (a.a.) range (PRO10)(GLN161)

nSSEs in this Concept: 13

String of secondary struct.elems. (SSEs) defining this concept: EEHEHHEHEHEEH

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	   (PRO10)   (ALA14) E1
	   (GLY24)   (LEU28) E2
	   (LEU28)   (LYS34) H3
	   (TYR36)   (TYR42) E4
	   (SER52)   (LEU61) H5
	   (LEU61)   (ARG67) H6
	   (LEU71)   (VAL76) E7
	   (SER78)   (THR88) H8
	  (HIS100)  (ILE106) E9
	  (SER109)  (ASN115) H10
	  (ALA126)  (ASP131) E11
	  (GLN137)  (ASN143) E12
	  (SER149)  (GLN161) H13

Orientation angles° of SSE-pairs; those in contact shown in bold font
          E1                                                                                         
E2     -177.4°   E2                                                                                  
H3      120.1°  -57.8°   H3                                                                           
E4       71.2° -111.3° -144.6°   E4                                                                    
H5      -90.9°   86.6°   40.0° -160.4°   H5                                                             
H6     -126.0°   52.0°   60.3°  143.8°  -54.1°   H6                                                      
E7       79.3° -102.9° -160.4°  -33.5° -152.9°  112.5°   E7                                               
H8      -70.0°  109.7°   69.2°   86.5°  -79.6° -128.0°  119.4°   H8                                        
E9       95.2°  -86.5° -142.0°  -56.4°  136.0°   88.6°  -24.0°  142.9°   E9                                 
H10    -164.8°   15.6°  -53.2° -106.4°   88.7°   65.0° -107.3°  -94.9°  -95.7°   H10                         
E11    -106.9°   70.6°  -44.0°  171.1°  -23.4°   30.7°  138.1° -101.1°  115.9°   77.7°   E11                  
E12      67.4° -115.1°  137.7°   -9.9°  152.1° -153.5°  -43.1°   76.6°  -66.3° -107.7°  174.2°   E12           
H13    -124.7°   53.1°  -54.7°  150.0°  -48.2°    6.3°  118.7° -121.8°   94.8°   64.9°  -25.0°  159.6°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±4.1°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d4gqcc_ :     (GLU9)  (LEU162)   [view usage] : c.47.1.10 |Thioredoxin fold |Thioredoxin-like |Glutathione peroxidase-like |Bacterioferritin comigratory protein |Aeropyrum pernix [TaxId: 56636]
 d3tjgb_ :    (PRO86)  (LYS240)   [view usage] : c.47.1.10 |Thioredoxin fold |Thioredoxin-like |Glutathione peroxidase-like |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d3tkpa_ :    (PRO49)  (LYS203)   [view usage] : c.47.1.10 |Thioredoxin fold |Thioredoxin-like |Glutathione peroxidase-like |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d3drnb_ :    (LEU10)  (GLU151)   [view usage] : c.47.1.0 |Thioredoxin fold |Thioredoxin-like |automated matches |automated matches |Sulfolobus solfataricus [TaxId: 2287]
 d3hjpa_ :    (GLU10)  (LEU157)   [view usage] : c.47.1.0 |Thioredoxin fold |Thioredoxin-like |automated matches |automated matches |Sulfolobus solfataricus [TaxId: 2287]
 d4k1fe_ :    (PRO13)  (LYS168)   [view usage] : c.47.1.10 |Thioredoxin fold |Thioredoxin-like |Glutathione peroxidase-like |automated matches |Leishmania major [TaxId: 5664]
 d2h66d_ :    (PRO10)  (LYS165)   [view usage] : c.47.1.0 |Thioredoxin fold |Thioredoxin-like |automated matches |automated matches |Plasmodium vivax [TaxId: 5855]
 d2h66b_ :    (PRO10)  (TYR166)   [view usage] : c.47.1.0 |Thioredoxin fold |Thioredoxin-like |automated matches |automated matches |Plasmodium vivax [TaxId: 5855]
 d2h66c_ :    (PRO10)  (LYS165)   [view usage] : c.47.1.0 |Thioredoxin fold |Thioredoxin-like |automated matches |automated matches |Plasmodium vivax [TaxId: 5855]
 d2i81b_ :    (PRO10)  (LYS165)   [view usage] : c.47.1.0 |Thioredoxin fold |Thioredoxin-like |automated matches |automated matches |Plasmodium vivax [TaxId: 126793]
 d2h66e_ :    (PRO10)  (GLN161)   [view usage] : c.47.1.0 |Thioredoxin fold |Thioredoxin-like |automated matches |automated matches |Plasmodium vivax [TaxId: 5855]
 d2h66i_ :    (PRO10)  (GLU164)   [view usage] : c.47.1.0 |Thioredoxin fold |Thioredoxin-like |automated matches |automated matches |Plasmodium vivax [TaxId: 5855]
 d2c0da_ :    (LYS24)  (THR182)   [view usage] : c.47.1.0 |Thioredoxin fold |Thioredoxin-like |automated matches |automated matches |Plasmodium falciparum [TaxId: 36329]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
  c.47