Protein Concepts Dictionary

Tableau information

Concept source:  d1n0ea_  amino acid (a.a.) range (GLY29)(ASN151)

nSSEs in this Concept: 13

String of secondary struct.elems. (SSEs) defining this concept: EEHEEHHEEHEEH

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	   (GLY29)   (ILE33) E1
	   (ASN39)   (ALA45) E2
	   (ALA45)   (PHE51) H3
	   (GLY53)   (ARG59) E4
	   (CYS64)   (LYS69) E5
	   (LYS69)   (ASN81) H6
	   (GLN87)  (ALA101) H7
	  (ASN102)  (ASP107) E8
	  (GLY110)  (PRO115) E9
	  (PRO115)  (LYS123) H10
	  (LYS126)  (GLY132) E11
	  (HIS136)  (ASP141) E12
	  (ASP141)  (ASN151) H13

Orientation angles° of SSE-pairs; those in contact shown in bold font
          E1                                                                                         
E2      138.9°   E2                                                                                  
H3     -108.5°  -90.6°   H3                                                                           
E4      -88.6°  124.0°  100.8°   E4                                                                    
E5      108.6°  -54.2°  -54.0°  152.5°   E5                                                             
H6     -116.2°  104.5°   68.1°   37.8°  114.9°   H6                                                      
H7       51.0°  -88.5° -110.9°  134.3°  -71.4° -166.9°   H7                                               
E8       76.0°  -62.9° -116.1°  142.8°  -64.0°  166.0°   26.8°   E8                                        
E9      -70.8°  150.2°   78.0°  -35.6°  129.9°  -45.7°  121.3°  146.7°   E9                                 
H10    -106.3°   84.9°  131.1°   47.0° -138.7°   66.1° -117.6° -104.9°  -82.3°   H10                         
E11     162.3°  -38.4°   59.1°  105.5°  -54.4°   72.6° -118.7°  -97.6°  114.9°   91.2°   E11                  
E12     -39.9°  133.4° -136.0°  -59.6°  145.1°  -96.7°   74.8°   88.8°  -63.8°  -66.5°  157.7°   E12           
H13    -144.4°  -65.5°   93.4°   59.2° -107.0°   46.5° -144.9° -119.6°   87.5°   41.1°   52.9°  105.4°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±4.1°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d1n0eb_ :    (GLY29)  (ASN151)   [view usage] : b.129.1.2 |Double-split beta-barrel |AbrB/MazE/MraZ-like |Hypothetical protein MraZ |Hypothetical protein MraZ |Mycoplasma pneumoniae [TaxId: 2104]
 d1n0ec_ :    (GLY29)  (ASN151)   [view usage] : b.129.1.2 |Double-split beta-barrel |AbrB/MazE/MraZ-like |Hypothetical protein MraZ |Hypothetical protein MraZ |Mycoplasma pneumoniae [TaxId: 2104]
 d1n0ea_ :    (GLY29)  (ASN151)   [view usage] : b.129.1.2 |Double-split beta-barrel |AbrB/MazE/MraZ-like |Hypothetical protein MraZ |Hypothetical protein MraZ |Mycoplasma pneumoniae [TaxId: 2104]
 d1n0fb_ :    (GLY29)  (ASN151)   [view usage] : b.129.1.2 |Double-split beta-barrel |AbrB/MazE/MraZ-like |Hypothetical protein MraZ |Hypothetical protein MraZ |Mycoplasma pneumoniae [TaxId: 2104]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
 b.129