Protein Concepts Dictionary

Tableau information

Concept source:  d1e2ye_  amino acid (a.a.) range (PRO13)(GLU168)

nSSEs in this Concept: 13

String of secondary struct.elems. (SSEs) defining this concept: EEEEHHEHEHEEH

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	   (PRO13)   (ASP17) E1
	   (ASP17)   (ASN23) E2
	   (LYS27)   (LEU31) E3
	   (TYR38)   (PRO45) E4
	   (PRO53)   (ALA63) H5
	   (ALA63)   (GLU68) H6
	   (GLU72)   (CYS78) E7
	   (SER80)   (SER89) H8
	  (ILE102)  (LYS108) E9
	  (LYS110)  (GLY117) H10
	  (ARG128)  (ASP134) E11
	  (ARG140)  (ASP146) E12
	  (GLU154)  (GLU168) H13

Orientation angles° of SSE-pairs; those in contact shown in bold font
          E1                                                                                         
E2      -64.2°   E2                                                                                  
E3     -177.0°  116.2°   E3                                                                           
E4       68.7°  104.2° -113.7°   E4                                                                    
H5      -94.4°  -64.6°   83.3° -163.0°   H5                                                             
H6     -128.4°  -97.9°   48.8°  157.0°  -38.6°   H6                                                      
E7       74.6°  125.4° -106.8°  -23.9° -155.7°  136.4°   E7                                               
H8      -73.3°  -21.5°  108.0°   91.0°  -81.6° -108.0°  114.6°   H8                                        
E9       89.4°  150.7°  -90.9°  -51.5°  133.8°  108.9°  -27.9°  142.4°   E9                                 
H10    -168.6° -106.6°   13.6° -109.2°   86.9°   57.3° -108.2°   95.7°  -97.9°   H10                         
E11    -108.7°  -86.1°   68.5°  166.0°  -21.9°  -19.9°  142.6° -101.5°  115.7°   76.0°   E11                  
E12      66.6°   88.1° -116.2°  -17.7°  152.0°  165.0°  -41.6°   73.5°  -69.0° -107.8°  173.8°   E12           
H13    -125.7° -102.5°   51.4°  153.3°  -40.5°   -6.8°  131.1° -114.0°  103.3°   61.2°  -19.6°  166.4°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±4.1°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d3tjba_ :    (PRO86)  (HIS241)   [view usage] : c.47.1.10 |Thioredoxin fold |Thioredoxin-like |Glutathione peroxidase-like |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d1e2yg_ :    (PRO13)  (HIS169)   [view usage] : c.47.1.10 |Thioredoxin fold |Thioredoxin-like |Glutathione peroxidase-like |Tryparedoxin peroxidase (thioredoxin peroxidase homologue) |Crithidia fasciculata [TaxId: 5656]
 d3ztla_ :    (PRO10)  (LYS164)   [view usage] : c.47.1.0 |Thioredoxin fold |Thioredoxin-like |automated matches |automated matches |Blood fluke (Schistosoma mansoni) [TaxId: 6183]
 d3ztle_ :    (PRO10)  (LYS164)   [view usage] : c.47.1.0 |Thioredoxin fold |Thioredoxin-like |automated matches |automated matches |Blood fluke (Schistosoma mansoni) [TaxId: 6183]
 d3ztlb_ :    (PRO10)  (PHE161)   [view usage] : c.47.1.0 |Thioredoxin fold |Thioredoxin-like |automated matches |automated matches |Blood fluke (Schistosoma mansoni) [TaxId: 6183]
 d1e2ye_ :    (PRO13)  (GLU168)   [view usage] : c.47.1.10 |Thioredoxin fold |Thioredoxin-like |Glutathione peroxidase-like |Tryparedoxin peroxidase (thioredoxin peroxidase homologue) |Crithidia fasciculata [TaxId: 5656]
 d3vwvb_ :    (PRO89)  (LYS243)   [view usage] : c.47.1.0 |Thioredoxin fold |Thioredoxin-like |automated matches |automated matches |Mouse (Mus musculus) [TaxId: 10090]
 d4fh8a_ :    (PRO11)  (HIS166)   [view usage] : c.47.1.10 |Thioredoxin fold |Thioredoxin-like |Glutathione peroxidase-like |automated matches |Ancylostoma ceylanicum [TaxId: 53326]
 d1e2yf_ :    (PRO13)  (PHE165)   [view usage] : c.47.1.10 |Thioredoxin fold |Thioredoxin-like |Glutathione peroxidase-like |Tryparedoxin peroxidase (thioredoxin peroxidase homologue) |Crithidia fasciculata [TaxId: 5656]
 d1e2yb_ :    (PRO13)  (HIS169)   [view usage] : c.47.1.10 |Thioredoxin fold |Thioredoxin-like |Glutathione peroxidase-like |Tryparedoxin peroxidase (thioredoxin peroxidase homologue) |Crithidia fasciculata [TaxId: 5656]
 d3vwva_ :    (PRO89)  (LYS243)   [view usage] : c.47.1.0 |Thioredoxin fold |Thioredoxin-like |automated matches |automated matches |Mouse (Mus musculus) [TaxId: 10090]
 d1e2ya_ :    (PRO13)  (HIS169)   [view usage] : c.47.1.10 |Thioredoxin fold |Thioredoxin-like |Glutathione peroxidase-like |Tryparedoxin peroxidase (thioredoxin peroxidase homologue) |Crithidia fasciculata [TaxId: 5656]
 d3zl5g_ :    (PRO10)  (GLU163)   [view usage] : c.47.1.0 |Thioredoxin fold |Thioredoxin-like |automated matches |automated matches |Blood fluke (Schistosoma mansoni) [TaxId: 6183]
 d3tkqb_ :    (PRO49)  (GLY205)   [view usage] : c.47.1.10 |Thioredoxin fold |Thioredoxin-like |Glutathione peroxidase-like |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d1e2yc_ :    (PRO13)  (GLU168)   [view usage] : c.47.1.10 |Thioredoxin fold |Thioredoxin-like |Glutathione peroxidase-like |Tryparedoxin peroxidase (thioredoxin peroxidase homologue) |Crithidia fasciculata [TaxId: 5656]
 d3ztlh_ :    (PRO10)  (LYS164)   [view usage] : c.47.1.0 |Thioredoxin fold |Thioredoxin-like |automated matches |automated matches |Blood fluke (Schistosoma mansoni) [TaxId: 6183]
 d1e2yh_ :    (PRO13)  (HIS169)   [view usage] : c.47.1.10 |Thioredoxin fold |Thioredoxin-like |Glutathione peroxidase-like |Tryparedoxin peroxidase (thioredoxin peroxidase homologue) |Crithidia fasciculata [TaxId: 5656]
 d1e2yd_ :    (PRO13)  (GLU168)   [view usage] : c.47.1.10 |Thioredoxin fold |Thioredoxin-like |Glutathione peroxidase-like |Tryparedoxin peroxidase (thioredoxin peroxidase homologue) |Crithidia fasciculata [TaxId: 5656]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
  c.47