Protein Concepts Dictionary

Tableau information

Concept source:  d3m3ec_  amino acid (a.a.) range (GLY2)(THR153)

nSSEs in this Concept: 13

String of secondary struct.elems. (SSEs) defining this concept: EEEEEEEHEEEEE

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	    (GLY2)    (ASN7) E1
	   (GLY11)   (ASP15) E2
	   (GLY23)   (PHE29) E3
	   (ASN44)   (GLU52) E4
	   (LEU57)   (PHE62) E5
	   (VAL68)   (PRO76) E6
	   (LEU81)   (SER87) E7
	   (ASP88)   (ALA94) H8
	   (LYS99)  (PHE105) E9
	  (ASP109)  (ILE115) E10
	  (GLU117)  (ILE121) E11
	  (SER133)  (THR139) E12
	  (THR147)  (THR153) E13

Orientation angles° of SSE-pairs; those in contact shown in bold font
          E1                                                                                         
E2      155.3°   E2                                                                                  
E3      -26.6°  148.1°   E3                                                                           
E4      137.0°  -23.7°  148.0°   E4                                                                    
E5      -45.6°  151.1°  -30.3°  173.6°   E5                                                             
E6      107.8°  -51.5°  123.7°  -29.2°  152.8°   E6                                                      
E7      -79.1°  117.3°  -57.6°  141.0°  -34.4°  163.4°   E7                                               
H8     -129.6°   54.1° -103.5°   76.8°  -97.4°  -99.0°   66.0°   H8                                        
E9      139.6°  -40.2°  166.0°  -30.4°  153.9°  -47.7°  134.4°   89.6°   E9                                 
E10     -54.0°  131.8°  -28.3°  149.3°  -24.5°  142.6°  -31.8°  -78.9°  165.4°   E10                         
E11      89.2°  -89.5°  115.5°  -69.9°  116.5°  -59.1°  137.1°  141.0°  -51.5°  138.7°   E11                  
E12     -23.0°  172.4°  -24.5°  159.4°  -24.5°  130.3°  -58.9° -119.8°  147.4°  -41.3°   97.5°   E12           
E13     172.5°  -21.7°  160.3°  -36.7°  141.3°  -65.6°  108.2°   56.8°  -33.3°  133.4°  -84.2°  162.1°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±5.0°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d2r0hc_ :     (MET1)  (VAL153)   [view usage] : b.29.1.0 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |automated matches |automated matches |Coprinus cinereus
 d3m3ec_ :     (GLY2)  (THR153)   [view usage] : b.29.1.0 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |automated matches |automated matches |Agrocybe aegerita [TaxId: 5400]
 d2zgoa_ :     (GLY2)  (THR153)   [view usage] : b.29.1.0 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |automated matches |automated matches |Agrocybe aegerita [TaxId: 5400]
 d2zgpa_ :     (GLY2)  (THR153)   [view usage] : b.29.1.0 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |automated matches |automated matches |Agrocybe aegerita [TaxId: 5400]
 d2zgla_ :     (GLY2)  (THR153)   [view usage] : b.29.1.0 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |automated matches |automated matches |Agrocybe aegerita [TaxId: 5400]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
  b.29