Protein Concepts Dictionary

Tableau information

Concept source:  d2imma_  amino acid (a.a.) range (ASP1)(LEU106)

nSSEs in this Concept: 13

String of secondary struct.elems. (SSEs) defining this concept: EEEEEEEEEHEEE

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	    (ASP1)    (SER7) E1
	    (SER9)   (VAL13) E2
	   (GLU17)   (SER26) E3
	   (SER26)   (ASN31) E4
	   (GLN31)   (LEU33) E5
	   (ALA34)   (PRO40) E6
	   (PRO43)   (ILE48) E7
	   (ARG61)   (SER67) E8
	   (THR69)   (ILE75) E9
	   (GLN79)   (VAL85) H10
	   (VAL85)   (ASN90) E11
	   (PRO95)   (GLY99) E12
	  (GLY101)  (LEU106) E13

Orientation angles° of SSE-pairs; those in contact shown in bold font
          E1                                                                                         
E2       30.9°   E2                                                                                  
E3      156.1° -166.7°   E3                                                                           
E4     -102.3°  -72.5°   96.1°   E4                                                                    
E5      -71.9°  -85.5°  107.4°  129.8°   E5                                                             
E6      -59.4°  -69.2°  123.5°  118.5°   16.7°   E6                                                      
E7       88.1°   79.8°  -88.5°  -59.0°  159.2°  147.0°   E7                                               
E8      132.1°  144.5°  -28.0°  -98.2°  123.1°  139.3°  -66.6°   E8                                        
E9      -39.6°  -27.3°  161.0°   82.3°  -61.4°  -44.8°  106.6°  171.0°   E9                                 
H10    -136.3° -166.9°   25.3°  120.6°   85.6°  102.2° -106.1°  -39.5° -146.7°   H10                         
E11     144.7°  132.4°  -34.4°   68.1°  141.0°  155.6°  -57.4°  -31.1°  150.4°   58.5°   E11                  
E12     -12.1°   42.8°  144.2° -113.0°  -70.0°  -60.4°   89.3°  122.5°  -50.0° -124.6°  141.7°   E12           
E13      20.8°  -17.6°  175.3°  -88.5°  -69.0°  -53.3°   94.3°  151.5°  -19.6° -150.1°  149.6°   32.3°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±4.1°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d3tt1l1 :     (ASP1)  (LYS111)   [view usage] : b.1.1.0 |Immunoglobulin-like beta-sandwich |Immunoglobulin |automated matches |automated matches |Mouse (Mus musculus) [TaxId: 10090]
 d3kj4b1 :     (ILE2)  (LYS112)   [view usage] : b.1.1.0 |Immunoglobulin-like beta-sandwich |Immunoglobulin |automated matches |automated matches |Mouse (Mus musculus) [TaxId: 10090]
 d3h3bc1 :     (ASP1)  (ILE112)   [view usage] : b.1.1.0 |Immunoglobulin-like beta-sandwich |Immunoglobulin |automated matches |automated matches |Mouse (Mus musculus) [TaxId: 10090]
 d4bz1l1 :     (ASP1)  (LYS113)   [view usage] : b.1.1.0 |Immunoglobulin-like beta-sandwich |Immunoglobulin |automated matches |automated matches |Mouse (Mus musculus) [TaxId: 10090]
 d1f11a1 :     (ASP1)  (ILE106)   [view usage] : b.1.1.1 |Immunoglobulin-like beta-sandwich |Immunoglobulin |V set domains (antibody variable domain-like) |Immunoglobulin light chain kappa variable domain, VL-kappa |Mouse (Mus musculus), cluster 2 [TaxId: 10090]
 d2gjjb1 :     (ILE2)  (ILE112)   [view usage] : b.1.1.0 |Immunoglobulin-like beta-sandwich |Immunoglobulin |automated matches |automated matches |Mouse (Mus musculus) [TaxId: 10090]
 d2imna_ :     (ILE2)  (LEU106)   [view usage] : b.1.1.1 |Immunoglobulin-like beta-sandwich |Immunoglobulin |V set domains (antibody variable domain-like) |Immunoglobulin light chain kappa variable domain, VL-kappa |Engineered (including hybrid species)
 d2imma_ :     (ASP1)  (LEU106)   [view usage] : b.1.1.1 |Immunoglobulin-like beta-sandwich |Immunoglobulin |V set domains (antibody variable domain-like) |Immunoglobulin light chain kappa variable domain, VL-kappa |Mouse (Mus musculus), cluster 1.2 [TaxId: 10090]
 d1h3pl1 :     (ASP1)  (LYS107)   [view usage] : b.1.1.1 |Immunoglobulin-like beta-sandwich |Immunoglobulin |V set domains (antibody variable domain-like) |Immunoglobulin light chain kappa variable domain, VL-kappa |Mouse (Mus musculus), cluster 1.2 [TaxId: 10090]
 d3mnva1 :     (ASP1)  (ILE106)   [view usage] : b.1.1.0 |Immunoglobulin-like beta-sandwich |Immunoglobulin |automated matches |automated matches |Mouse (Mus musculus) [TaxId: 10090]
 d2i9la1 :     (ASP1)  (ILE111)   [view usage] : b.1.1.0 |Immunoglobulin-like beta-sandwich |Immunoglobulin |automated matches |automated matches |Mouse (Mus musculus) [TaxId: 10090]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
   b.1