Tableau information
Concept source: d1idka_ amino acid (a.a.) range (ALA155)(GLU265)
nSSEs in this Concept: 13
String of secondary struct.elems. (SSEs) defining this concept: EEEEEEEEEEEEE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(ALA155) (ASP160) E1
(LEU163) (HIS168) E2
(HIS168) (ARG173) E3
(HIS178) (GLY182) E4
(ASN187) (ASN193) E5
(ASN193) (VAL199) E6
(ALA213) (ASP217) E7
(ASP221) (GLY227) E8
(GLY227) (HIS232) E9
(SER237) (ASP242) E10
(LEU245) (ASN250) E11
(ASN250) (ASP255) E12
(ALA260) (GLU265) E13
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
E2 -166.0° E2
E3 -118.9° -71.8° E3
E4 -12.9° -174.0° 106.5° E4
E5 154.4° -12.5° -84.2° -166.8° E5
E6 -131.4° 58.4° -14.0° -119.5° -70.6° E6
E7 -13.7° -173.4° 105.7° -0.9° -167.3° 118.6° E7
E8 144.4° -22.9° -94.5° 157.2° -10.4° -80.9° -157.9° E8
E9 -128.4° 60.9° -12.6° -116.7° 73.0° 3.4° -115.8° -83.2° E9
E10 -18.6° 170.6° 100.7° -5.8° -170.8° 113.7° -5.0° -162.5° 111.0° E10
E11 141.6° -26.1° -97.9° 154.5° -13.7° -84.3° 155.2° -3.6° -86.7° -160.0° E11
E12 -138.5° 51.0° -21.2° -126.8° 63.2° -7.4° -125.9° 73.5° -10.1° -121.0° -77.0° E12
E13 -22.1° 164.5° 96.9° -10.7° -167.3° 109.4° -9.8° -162.2° 106.5° -6.2° -160.8° 116.6°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±13.0° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d1idja_ : (ILE104) (ASP217) [view usage] : b.80.1.2 |Single-stranded right-handed beta-helix |Pectin lyase-like |Pectin lyase |Pectin lyase |Aspergillus niger, type A [TaxId: 5061]
d1idka_ : (ILE104) (ASP217) [view usage] : b.80.1.2 |Single-stranded right-handed beta-helix |Pectin lyase-like |Pectin lyase |Pectin lyase |Aspergillus niger, type A [TaxId: 5061]
d3riqa_ : (ALA390) (GLY508) [view usage] : b.80.1.0 |Single-stranded right-handed beta-helix |Pectin lyase-like |automated matches |automated matches |Siphovirus 9na
d1ee6a_ : (ILE43) (ASN134) [view usage] : b.80.1.1 |Single-stranded right-handed beta-helix |Pectin lyase-like |Pectate lyase-like |Pectate lyase |Bacillus sp., strain ksmp15 [TaxId: 1409]
d4c2la_ : (GLY208) (SER320) [view usage] : b.80.1.0 |Single-stranded right-handed beta-helix |Pectin lyase-like |automated matches |automated matches |Aspergillus tubingensis [TaxId: 5068]
d1czfa_ : (ALA181) (GLN288) [view usage] : b.80.1.3 |Single-stranded right-handed beta-helix |Pectin lyase-like |Galacturonase |Polygalacturonase |Fungus (Aspergillus niger), endo-polygalacturonase II [TaxId: 5061]
d1rmga_ : (GLY178) (GLY282) [view usage] : b.80.1.3 |Single-stranded right-handed beta-helix |Pectin lyase-like |Galacturonase |Rhamnogalacturonase A |Fungus (Aspergillus aculeatus) [TaxId: 5053]
d1ru4a_ : (GLY134) (ASP240) [view usage] : b.80.1.9 |Single-stranded right-handed beta-helix |Pectin lyase-like |Pectate transeliminase |Pectate transeliminase |Erwinia chrysanthemi [TaxId: 556]
d1dbga_ : (ILE246) (ASN358) [view usage] : b.80.1.4 |Single-stranded right-handed beta-helix |Pectin lyase-like |Chondroitinase B |Chondroitinase B |Pedobacter heparinus [TaxId: 984]
d1rwra_ : (LYS179) (GLY297) [view usage] : b.80.1.11 |Single-stranded right-handed beta-helix |Pectin lyase-like |Filamentous hemagglutinin FhaB, secretion domain |Filamentous hemagglutinin FhaB, secretion domain |Bordetella pertussis [TaxId: 520]
d1daba_ : (THR78) (LEU189) [view usage] : b.80.1.7 |Single-stranded right-handed beta-helix |Pectin lyase-like |Virulence factor P.69 pertactin |Virulence factor P.69 pertactin |Bordetella pertussis [TaxId: 520]
d1daba_ : (GLY208) (VAL344) [view usage] : b.80.1.7 |Single-stranded right-handed beta-helix |Pectin lyase-like |Virulence factor P.69 pertactin |Virulence factor P.69 pertactin |Bordetella pertussis [TaxId: 520]
d1bhea_ : (LEU153) (GLU258) [view usage] : b.80.1.3 |Single-stranded right-handed beta-helix |Pectin lyase-like |Galacturonase |Polygalacturonase |Erwinia carotovora, subsp. carotovora [TaxId: 554]
d1ofla_ : (ILE246) (ASN358) [view usage] : b.80.1.4 |Single-stranded right-handed beta-helix |Pectin lyase-like |Chondroitinase B |Chondroitinase B |Pedobacter heparinus [TaxId: 984]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
b.80