Protein Concepts Dictionary

Tableau information

Concept source:  d1w8za_  amino acid (a.a.) range (ALA5)(THR134)

nSSEs in this Concept: 13

String of secondary struct.elems. (SSEs) defining this concept: EEEEEEEEEEEEE

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	    (ALA5)   (PHE11) E1
	   (GLY20)   (TRP26) E2
	   (THR29)   (TYR33) E3
	   (MET37)   (GLU43) E4
	   (TYR46)   (SER55) E5
	   (GLY61)   (ASP66) E6
	   (ASP66)   (GLU70) E7
	   (LYS72)   (VAL77) E8
	   (ASP83)   (PRO93) E9
	   (GLU96)  (ASP107) E10
	  (ASP111)  (GLN116) E11
	  (ASP123)  (ASN129) E12
	  (LEU130)  (THR134) E13

Orientation angles° of SSE-pairs; those in contact shown in bold font
          E1                                                                                         
E2      -67.6°   E2                                                                                  
E3      -97.5°  133.3°   E3                                                                           
E4       68.8°  -14.5°  147.6°   E4                                                                    
E5      119.8°  153.0°  -73.4°  139.0°   E5                                                             
E6      -37.3°  -79.1°   66.1°  -88.4°  123.5°   E6                                                      
E7       49.7°  -18.5°  123.8°  -26.1°  157.9°   62.4°   E7                                               
E8      123.2°  128.9°  -96.8°  115.4°  -24.1°  142.8°  138.5°   E8                                        
E9      -73.7°  -80.9°   52.5°  -95.1°  125.9°  -38.3°  -73.0°  148.5°   E9                                 
E10     127.9°   90.9° -128.3°   79.7°  -63.7°  164.7°  105.8°  -40.7°  151.7°   E10                         
E11     -54.9°  -40.6°   93.9°  -54.0°  165.9°  -43.5°  -31.2°  169.4°  -42.0°  130.4°   E11                  
E12    -126.1°  166.3°  -50.0°  160.4°  -25.9°  111.1°  173.5°  -47.2°  101.4°  -80.7°  143.3°   E12           
E13     160.8°  110.0°  -97.2°  104.0°  -53.6°  161.5° -128.3°  -42.3°  125.4°  -33.7°  136.1°   57.6°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±4.1°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d1oh3a_ :     (THR6)  (THR134)   [view usage] : b.18.1.19 |Galactose-binding domain-like |Galactose-binding domain-like |Family 29 carbohydrate binding module, CBM29 |Non-catalytic protein 1, Ncp1 |Piromyces equi [TaxId: 99929]
 d1w8zb_ :     (ALA5)  (THR134)   [view usage] : b.18.1.19 |Galactose-binding domain-like |Galactose-binding domain-like |Family 29 carbohydrate binding module, CBM29 |automated matches |Piromyces equi [TaxId: 99929]
 d1w8ua_ :     (THR6)  (THR134)   [view usage] : b.18.1.19 |Galactose-binding domain-like |Galactose-binding domain-like |Family 29 carbohydrate binding module, CBM29 |automated matches |Piromyces equi [TaxId: 99929]
 d1gwla_ :     (THR6)  (THR134)   [view usage] : b.18.1.19 |Galactose-binding domain-like |Galactose-binding domain-like |Family 29 carbohydrate binding module, CBM29 |Non-catalytic protein 1, Ncp1 |Piromyces equi [TaxId: 99929]
 d1w8wb_ :     (THR6)  (THR134)   [view usage] : b.18.1.19 |Galactose-binding domain-like |Galactose-binding domain-like |Family 29 carbohydrate binding module, CBM29 |automated matches |Piromyces equi [TaxId: 99929]
 d1w8za_ :     (ALA5)  (THR134)   [view usage] : b.18.1.19 |Galactose-binding domain-like |Galactose-binding domain-like |Family 29 carbohydrate binding module, CBM29 |automated matches |Piromyces equi [TaxId: 99929]
 d1w90b_ :     (THR6)  (THR134)   [view usage] : b.18.1.19 |Galactose-binding domain-like |Galactose-binding domain-like |Family 29 carbohydrate binding module, CBM29 |automated matches |Piromyces equi [TaxId: 99929]
 d1gwka_ :     (THR6)  (THR134)   [view usage] : b.18.1.19 |Galactose-binding domain-like |Galactose-binding domain-like |Family 29 carbohydrate binding module, CBM29 |Non-catalytic protein 1, Ncp1 |Piromyces equi [TaxId: 99929]
 d1w90a_ :     (ALA5)  (THR134)   [view usage] : b.18.1.19 |Galactose-binding domain-like |Galactose-binding domain-like |Family 29 carbohydrate binding module, CBM29 |automated matches |Piromyces equi [TaxId: 99929]
 d1w9fb_ :     (ALA5)  (THR134)   [view usage] : b.18.1.19 |Galactose-binding domain-like |Galactose-binding domain-like |Family 29 carbohydrate binding module, CBM29 |automated matches |Piromyces equi [TaxId: 99929]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
  b.18