Protein Concepts Dictionary

Tableau information

Concept source:  d1bkea1  amino acid (a.a.) range (SER5)(GLN196)

nSSEs in this Concept: 12

String of secondary struct.elems. (SSEs) defining this concept: HHHHHHHHHHHH

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	    (SER5)   (GLY15) H1
	   (GLU16)   (TYR30) H2
	   (PHE36)   (ASP56) H3
	   (ALA59)   (SER65) H4
	   (SER65)   (VAL77) H5
	   (LEU80)   (GLY85) H6
	   (GLU86)   (ALA92) H7
	   (GLN94)  (LYS106) H8
	  (GLU119)  (ASN130) H9
	  (ASN130)  (HIS146) H10
	  (ALA151)  (ALA171) H11
	  (ALA175)  (GLN196) H12

Orientation angles° of SSE-pairs; those in contact shown in bold font
          H1                                                                                  
H2      119.4°   H2                                                                           
H3     -101.3°  133.5°   H3                                                                    
H4       83.9°   64.1° -101.9°   H4                                                             
H5      -97.1°  -56.6°  143.2°  111.6°   H5                                                      
H6       75.3°  -55.9° -122.6°  -21.4°   92.8°   H6                                               
H7      121.3°  115.0°   20.1°  101.8° -131.4°  123.1°   H7                                        
H8      -47.6°   72.9° -147.6°  -70.3°   62.7°   50.1° -165.8°   H8                                 
H9     -115.5°  124.4°  -33.6° -131.3°  109.6° -152.7°  -29.6°  155.3°   H9                          
H10     119.8°  -38.5°  102.8°   37.4°  -95.1°  -45.3°   90.5°  -89.6°  114.9°   H10                  
H11     -34.8°  114.3° -112.0° -112.7°   68.9°   96.9° -128.3°   49.9° -105.5°  139.5°   H11           
H12     139.3°  -61.1°   73.5°   59.0° -111.0°  -74.5°   58.7° -121.9°   82.8°  -32.4°  171.4°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±4.1°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d1n5ua1 :     (SER5)  (GLN196)   [view usage] : a.126.1.1 |Serum albumin-like |Serum albumin-like |Serum albumin-like |Serum albumin |Human (Homo sapiens) [TaxId: 9606]
 d4f5ta1 :     (SER5)  (GLU195)   [view usage] : a.126.1.0 |Serum albumin-like |Serum albumin-like |automated matches |automated matches |Horse (Equus caballus) [TaxId: 9796]
 d4jk4a1 :     (SER5)  (GLN195)   [view usage] : a.126.1.0 |Serum albumin-like |Serum albumin-like |automated matches |automated matches |Cow (Bos taurus) [TaxId: 9913]
 d3v08a1 :     (GLU6)  (GLU195)   [view usage] : a.126.1.0 |Serum albumin-like |Serum albumin-like |automated matches |automated matches |Horse (Equus caballus) [TaxId: 9796]
 d1bkea1 :     (SER5)  (GLN196)   [view usage] : a.126.1.1 |Serum albumin-like |Serum albumin-like |Serum albumin-like |Serum albumin |Human (Homo sapiens) [TaxId: 9606]
 d3v03a1 :     (SER5)  (GLN195)   [view usage] : a.126.1.0 |Serum albumin-like |Serum albumin-like |automated matches |automated matches |Cow (Bos taurus) [TaxId: 9913]
 d1bj5a1 :     (SER5)  (GLN196)   [view usage] : a.126.1.1 |Serum albumin-like |Serum albumin-like |Serum albumin-like |Serum albumin |Human (Homo sapiens) [TaxId: 9606]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
 a.126