Protein Concepts Dictionary

Tableau information

Concept source:  d4k4xa_  amino acid (a.a.) range (PHE54)(ASN201)

nSSEs in this Concept: 12

String of secondary struct.elems. (SSEs) defining this concept: HHHHHHHEHEHH

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	   (PHE54)   (PHE59) H1
	   (PHE59)   (ILE63) H2
	   (GLU72)   (ASP89) H3
	   (LYS96)  (VAL101) H4
	  (TYR118)  (GLY124) H5
	  (LYS126)  (LEU131) H6
	  (LEU138)  (TYR148) H7
	  (LEU152)  (VAL158) E8
	  (SER164)  (GLY171) H9
	  (ARG174)  (SER180) E10
	  (SER180)  (GLY192) H11
	  (GLY192)  (ASN201) H12

Orientation angles° of SSE-pairs; those in contact shown in bold font
          H1                                                                                  
H2      -44.1°   H2                                                                           
H3      -73.3°  115.3°   H3                                                                    
H4      138.0°  110.0°  106.2°   H4                                                             
H5      150.2° -165.0°   77.4°  -56.7°   H5                                                      
H6      -42.8°  -84.3°  -47.1° -153.2°  110.7°   H6                                               
H7     -103.6°  -69.4° -158.9°   90.1°  101.8°  116.5°   H7                                        
E8      125.5°  103.5°  100.1°   13.1°   65.0° -144.5°   98.5°   E8                                 
H9      115.6°  103.8° -119.1° -101.4°  -74.4°   96.7°   42.6° -114.3°   H9                          
E10     -68.5° -102.3°  -57.4° -147.6°   91.2°   29.1° -101.8°  151.5°  -70.4°   E10                  
H11      16.1°   41.3°  -74.0°  121.9° -149.4°  -55.1° -108.9° -109.4°  130.0°   82.8°   H11           
H12      84.2°   79.6°   79.5°   55.4°  -95.8° -108.1°  121.3°  -42.3°  155.3° -133.5°  -68.3°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±4.1°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d4k4ua_ :    (SER28)  (ASN201)   [view usage] : e.8.1.4 |DNA/RNA polymerases |DNA/RNA polymerases |RNA-dependent RNA-polymerase |automated matches |Human poliovirus 1 [TaxId: 12081]
 d4k4wa_ :    (PHE54)  (ASN201)   [view usage] : e.8.1.4 |DNA/RNA polymerases |DNA/RNA polymerases |RNA-dependent RNA-polymerase |automated matches |Human poliovirus 1 [TaxId: 12081]
 d2ijd12 :   (PRO191)  (ASN384)   [view usage] : e.8.1.4 |DNA/RNA polymerases |DNA/RNA polymerases |RNA-dependent RNA-polymerase |Viral RNA polymerase |Poliovirus type 1, strain Mahoney [TaxId: 12080]
 d4k50a_ :    (ASP53)  (ASN201)   [view usage] : e.8.1.4 |DNA/RNA polymerases |DNA/RNA polymerases |RNA-dependent RNA-polymerase |Viral RNA polymerase |Human rhinovirus 16 [TaxId: 31708]
 d3n6la_ :    (PHE54)  (ASN201)   [view usage] : e.8.1.4 |DNA/RNA polymerases |DNA/RNA polymerases |RNA-dependent RNA-polymerase |automated matches |Human enterovirus 71 [TaxId: 39054]
 d2ec0a_ :    (HIS27)  (ASN206)   [view usage] : e.8.1.4 |DNA/RNA polymerases |DNA/RNA polymerases |RNA-dependent RNA-polymerase |Viral RNA polymerase |Foot-and-mouth disease virus [TaxId: 12110]
 d4k4sa_ :    (ASP53)  (ASN201)   [view usage] : e.8.1.4 |DNA/RNA polymerases |DNA/RNA polymerases |RNA-dependent RNA-polymerase |automated matches |Human poliovirus 1 [TaxId: 12081]
 d4wfxa_ :    (PHE54)  (PRO202)   [view usage] : e.8.1.4 |DNA/RNA polymerases |DNA/RNA polymerases |RNA-dependent RNA-polymerase |automated matches |Coxsackievirus b3 [TaxId: 103903]
 d1tp7a_ :     (HIS8)  (ASN201)   [view usage] : e.8.1.4 |DNA/RNA polymerases |DNA/RNA polymerases |RNA-dependent RNA-polymerase |Viral RNA polymerase |Human rhinovirus 16 [TaxId: 31708]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
   e.8