Protein Concepts Dictionary

Tableau information

Concept source:  d1yrha1  amino acid (a.a.) range (GLN47)(LEU198)

nSSEs in this Concept: 12

String of secondary struct.elems. (SSEs) defining this concept: HHHEHHEHEHEH

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	   (GLN47)   (GLN53) H1
	   (GLN53)   (LYS64) H2
	   (ALA72)   (ALA77) H3
	   (ALA79)   (PRO85) E4
	   (THR92)  (GLY103) H5
	  (GLY103)  (GLY109) H6
	  (PHE116)  (ALA122) E7
	  (GLY128)  (GLY144) H8
	  (VAL146)  (PRO150) E9
	  (GLU155)  (GLY161) H10
	  (GLY166)  (ASN172) E11
	  (LEU177)  (LEU198) H12

Orientation angles° of SSE-pairs; those in contact shown in bold font
          H1                                                                                  
H2     -107.0°   H2                                                                           
H3       66.2°   65.2°   H3                                                                    
E4       72.7° -156.1°  131.2°   E4                                                             
H5     -143.6°  -42.0°  -80.5° -143.7°   H5                                                      
H6      105.1°   58.5°  -39.9° -145.3°  -47.0°   H6                                               
E7       58.9°  147.5°  121.9°  -15.4° -157.2° -149.1°   E7                                        
H8     -143.0°  -38.7°  -82.3°  143.9°    5.2°  -50.8°  155.8°   H8                                 
E9       13.0°  119.8°   75.9°  -60.3°  155.7°  112.8°  -47.1°  155.7°   E9                          
H10      83.2°  151.2° -141.2°   10.8° -133.2° -146.2°   24.7°  133.2°  -70.9°   H10                  
E11      61.2°  131.1°  127.4°  -27.2°  149.1° -163.8°  -17.1°  145.4°   52.1°   31.7°   E11           
H12    -135.0°  -40.0°  -70.7°  151.2°   -9.9°   37.6° -166.0°  -13.2°  146.4° -141.4° -158.5°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±4.1°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d1ydga_ :    (PRO46)  (SER203)   [view usage] : c.23.5.8 |Flavodoxin-like |Flavoproteins |WrbA-like |Trp repressor binding protein WrbA |Deinococcus radiodurans [TaxId: 1299]
 d4la4a_ :    (GLY53)  (ALA200)   [view usage] : c.23.5.0 |Flavodoxin-like |Flavoproteins |automated matches |automated matches |Pseudomonas sp. [TaxId: 165468]
 d4lafa_ :    (GLY53)  (LYS207)   [view usage] : c.23.5.0 |Flavodoxin-like |Flavoproteins |automated matches |automated matches |Pseudomonas sp. [TaxId: 165468]
 d1ydge_ :    (PRO46)  (SER203)   [view usage] : c.23.5.8 |Flavodoxin-like |Flavoproteins |WrbA-like |Trp repressor binding protein WrbA |Deinococcus radiodurans [TaxId: 1299]
 d1yrhe_ :    (PRO46)  (GLU200)   [view usage] : c.23.5.8 |Flavodoxin-like |Flavoproteins |WrbA-like |Trp repressor binding protein WrbA |Deinococcus radiodurans [TaxId: 1299]
 d1yrhb_ :    (GLN47)  (SER203)   [view usage] : c.23.5.8 |Flavodoxin-like |Flavoproteins |WrbA-like |Trp repressor binding protein WrbA |Deinococcus radiodurans [TaxId: 1299]
 d1yrhc_ :    (ASP48)  (SER203)   [view usage] : c.23.5.8 |Flavodoxin-like |Flavoproteins |WrbA-like |Trp repressor binding protein WrbA |Deinococcus radiodurans [TaxId: 1299]
 d1yrhf_ :    (PRO46)  (SER203)   [view usage] : c.23.5.8 |Flavodoxin-like |Flavoproteins |WrbA-like |Trp repressor binding protein WrbA |Deinococcus radiodurans [TaxId: 1299]
 d4lafb_ :    (GLY53)  (ASN206)   [view usage] : c.23.5.0 |Flavodoxin-like |Flavoproteins |automated matches |automated matches |Pseudomonas sp. [TaxId: 165468]
 d1yrha1 :    (GLN47)  (LEU198)   [view usage] : c.23.5.8 |Flavodoxin-like |Flavoproteins |WrbA-like |Trp repressor binding protein WrbA |Deinococcus radiodurans [TaxId: 1299]
 d1ydgb_ :    (PRO46)  (SER203)   [view usage] : c.23.5.8 |Flavodoxin-like |Flavoproteins |WrbA-like |Trp repressor binding protein WrbA |Deinococcus radiodurans [TaxId: 1299]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
  c.23