Protein Concepts Dictionary

Tableau information

Concept source:  d4e3qb_  amino acid (a.a.) range (LYS66)(GLU257)

nSSEs in this Concept: 12

String of secondary struct.elems. (SSEs) defining this concept: HHEHEHHEHEHE

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	   (LYS66)   (ARG78) H1
	   (ASP91)  (VAL103) H2
	  (GLY109)  (TYR113) E3
	  (SER116)  (GLY136) H4
	  (ARG141)  (ARG146) E5
	  (ALA155)  (THR161) H6
	  (LYS163)  (PHE169) H7
	  (GLY175)  (THR180) E8
	  (THR193)  (ARG211) H9
	  (GLY219)  (GLU223) E10
	  (GLY237)  (TYR249) H11
	  (PRO252)  (GLU257) E12

Orientation angles° of SSE-pairs; those in contact shown in bold font
          H1                                                                                  
H2     -142.0°   H2                                                                           
E3      -78.6°  131.2°   E3                                                                    
H4       63.0°  -79.1°  127.8°   H4                                                             
E5     -160.4°   57.1°  -88.3°  136.0°   E5                                                      
H6      156.7°   16.4° -116.1°   94.1°  -42.9°   H6                                               
H7      -35.4° -136.8°   54.6°  -74.3° -140.6° -138.2°   H7                                        
E8      168.3°   41.1° -106.2°  118.7°  -18.2°  -29.8° -155.1°   E8                                 
H9      -23.5° -124.6°   81.8°  -49.1°  166.7°  135.6°   27.6°  165.3°   H9                          
E10    -133.6°   82.6°  -74.2°  157.7°  -27.0°  -69.6°  128.0°  -41.6°  152.1°   E10                  
H11      31.9° -111.1°   99.1°  -32.8°  167.7°  124.8°  -44.7°  151.4°  -17.3° -165.3°   H11           
E12    -114.5°  102.3°  -59.4°  168.8°  -45.9°  -88.8°  110.3°  -61.4°  132.4°  -19.8° -146.3°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±4.1°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d2e54a_ :    (ARG48)  (GLU212)   [view usage] : c.67.1.0 |PLP-dependent transferase-like |PLP-dependent transferases |automated matches |automated matches |Thermotoga maritima [TaxId: 243274]
 d2orda_ :    (PRO47)  (GLU212)   [view usage] : c.67.1.0 |PLP-dependent transferase-like |PLP-dependent transferases |automated matches |automated matches |Thermotoga maritima [TaxId: 243274]
 d1vefa1 :    (PRO87)  (GLU226)   [view usage] : c.67.1.4 |PLP-dependent transferase-like |PLP-dependent transferases |GABA-aminotransferase-like |Acetylornithine/acetyl-lysine aminotransferase ArgD |Thermus thermophilus [TaxId: 274]
 d3nx3b_ :    (ALA55)  (GLU220)   [view usage] : c.67.1.0 |PLP-dependent transferase-like |PLP-dependent transferases |automated matches |automated matches |Campylobacter jejuni [TaxId: 192222]
 d3nuia_ :    (LYS66)  (GLU257)   [view usage] : c.67.1.0 |PLP-dependent transferase-like |PLP-dependent transferases |automated matches |automated matches |Vibrio fluvialis [TaxId: 676]
 d2eh6a_ :    (PRO47)  (GLU213)   [view usage] : c.67.1.0 |PLP-dependent transferase-like |PLP-dependent transferases |automated matches |automated matches |Aquifex aeolicus [TaxId: 224324]
 d4e3qc_ :    (LYS66)  (GLU257)   [view usage] : c.67.1.0 |PLP-dependent transferase-like |PLP-dependent transferases |automated matches |automated matches |Vibrio fluvialis [TaxId: 676]
 d4e3qb_ :    (LYS66)  (GLU257)   [view usage] : c.67.1.0 |PLP-dependent transferase-like |PLP-dependent transferases |automated matches |automated matches |Vibrio fluvialis [TaxId: 676]
 d4e3qa_ :    (LYS66)  (GLU257)   [view usage] : c.67.1.0 |PLP-dependent transferase-like |PLP-dependent transferases |automated matches |automated matches |Vibrio fluvialis [TaxId: 676]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
  c.67