Protein Concepts Dictionary

Tableau information

Concept source:  d1p8oa_  amino acid (a.a.) range (GLY27)(GLY194)

nSSEs in this Concept: 12

String of secondary struct.elems. (SSEs) defining this concept: HHEHEHEHHHEH

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	   (GLY27)   (GLY35) H1
	   (GLY35)   (THR43) H2
	   (ASN46)   (GLY51) E3
	   (ARG71)   (LYS89) H4
	   (ILE93)   (GLY98) E5
	  (ASP100)  (PRO116) H6
	  (LEU118)  (ASP124) E7
	  (LEU140)  (PRO144) H8
	  (PRO144)  (LEU149) H9
	  (PRO160)  (VAL165) H10
	  (ILE174)  (GLY178) E11
	  (ASP183)  (GLY194) H12

Orientation angles° of SSE-pairs; those in contact shown in bold font
          H1                                                                                  
H2       55.4°   H2                                                                           
E3     -137.3°  162.9°   E3                                                                    
H4       39.3°  -22.6°  155.6°   H4                                                             
E5      121.3°  163.2°  -31.1°  160.4°   E5                                                      
H6      -76.8°  -30.9°  132.3°  -37.6°  161.4°   H6                                               
E7       91.9°  133.3°  -63.3°  129.8°  -33.1°  164.2°   E7                                        
H8      -61.9°    7.2°  158.6°  -29.7° -159.7°   30.1° -134.3°   H8                                 
H9     -100.0°  -48.4°  114.7°  -60.8°  138.7°  -23.8° -159.9°  -44.2°   H9                          
H10      57.7°   -6.1°  157.4°   21.5° -169.0°   25.2°  139.2°   -9.8°  -44.1°   H10                  
E11      73.6°  116.1°  -81.0°  110.9°  -51.7°  146.5°  -18.9°  118.4° -158.7°  121.6°   E11           
H12     -77.9°  -22.9°  141.1°  -41.3°  156.1°   20.1° -147.0°  -17.5°   27.0°  -20.4° -134.1°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±4.1°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d1hqxa_ :    (GLY23)  (GLY194)   [view usage] : c.42.1.1 |Arginase/deacetylase |Arginase/deacetylase |Arginase-like amidino hydrolases |Arginase |Norway rat (Rattus norvegicus) [TaxId: 10116]
 d1p8oa_ :    (GLY27)  (GLY194)   [view usage] : c.42.1.1 |Arginase/deacetylase |Arginase/deacetylase |Arginase-like amidino hydrolases |Arginase |Norway rat (Rattus norvegicus) [TaxId: 10116]
 d1t5fa1 :    (ARG21)  (GLY194)   [view usage] : c.42.1.1 |Arginase/deacetylase |Arginase/deacetylase |Arginase-like amidino hydrolases |Arginase |Norway rat (Rattus norvegicus) [TaxId: 10116]
 d1hqfa_ :    (LYS26)  (GLY194)   [view usage] : c.42.1.1 |Arginase/deacetylase |Arginase/deacetylase |Arginase-like amidino hydrolases |Arginase |Norway rat (Rattus norvegicus) [TaxId: 10116]
 d1p8sa_ :    (GLY27)  (GLY194)   [view usage] : c.42.1.1 |Arginase/deacetylase |Arginase/deacetylase |Arginase-like amidino hydrolases |Arginase |Norway rat (Rattus norvegicus) [TaxId: 10116]
 d1pq3a_ :    (HIS44)  (ASP213)   [view usage] : c.42.1.1 |Arginase/deacetylase |Arginase/deacetylase |Arginase-like amidino hydrolases |Arginase |Human (Homo sapiens), isoform II, mitochondrial [TaxId: 9606]
 d1p8ma_ :    (LYS26)  (GLY194)   [view usage] : c.42.1.1 |Arginase/deacetylase |Arginase/deacetylase |Arginase-like amidino hydrolases |Arginase |Norway rat (Rattus norvegicus) [TaxId: 10116]
 d1ta1a_ :    (GLY22)  (GLY194)   [view usage] : c.42.1.1 |Arginase/deacetylase |Arginase/deacetylase |Arginase-like amidino hydrolases |Arginase |Norway rat (Rattus norvegicus) [TaxId: 10116]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
  c.42