Protein Concepts Dictionary

Tableau information

Concept source:  d3l07b2  amino acid (a.a.) range (HIS122)(ARG282)

nSSEs in this Concept: 12

String of secondary struct.elems. (SSEs) defining this concept: HHEHEHEEEHEH

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	  (HIS122)  (ARG132) H1
	  (THR141)  (GLY153) H2
	  (ALA159)  (GLY165) E3
	  (SER167)  (LYS182) H4
	  (THR184)  (ARG190) E5
	  (LYS196)  (ALA202) H6
	  (ASP203)  (ALA208) E7
	  (VAL225)  (HIS233) E8
	  (LYS237)  (ASP241) E9
	  (ASP243)  (VAL251) H10
	  (ALA252)  (PRO258) E11
	  (GLY260)  (ARG282) H12

Orientation angles° of SSE-pairs; those in contact shown in bold font
          H1                                                                                  
H2       31.1°   H2                                                                           
E3     -156.1°  151.2°   E3                                                                    
H4       27.5°  -38.6° -170.2°   H4                                                             
E5     -138.1°  136.7°  -19.0° -164.6°   E5                                                      
H6       61.9°  -39.4° -138.3°   46.7° -144.0°   H6                                               
E7     -174.0°  152.1°  -18.0°  157.4°  -36.4° -123.7°   E7                                        
E8     -161.7°  141.4°  -14.3°  169.0°  -26.4° -124.3°   15.0°   E8                                 
E9      -51.1°  -80.9°  122.4°  -49.8°  120.4°   95.5°  126.9°  136.1°   E9                          
H10      24.7°  -35.3°  173.3°   -3.5°  162.6°  -46.2° -160.5° -170.1°   51.5°   H10                  
E11     166.0°  136.4°  -26.4°  155.4°  -39.9°  111.9°  -15.7°  -13.6°  142.5° -156.6°   E11           
H12      98.3°  101.6° -101.2°   71.6° -119.7°   70.8°  -85.9° -100.1°   74.1°   75.0°  -90.8°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±4.6°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d1a4ib1 :   (THR128)  (LEU295)   [view usage] : c.2.1.7 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |Aminoacid dehydrogenase-like, C-terminal domain |Methylenetetrahydrofolate dehydrogenase/cyclohydrolase |Human (Homo sapiens) [TaxId: 9606]
 d2c2xa2 :   (HIS123)  (ARG281)   [view usage] : c.2.1.0 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |automated matches |automated matches |Mycobacterium tuberculosis [TaxId: 83332]
 d3ngla2 :   (TYR119)  (ASN274)   [view usage] : c.2.1.0 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |automated matches |automated matches |Thermoplasma acidophilum [TaxId: 2303]
 d3l07b2 :   (HIS122)  (ARG282)   [view usage] : c.2.1.0 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |automated matches |automated matches |Francisella tularensis [TaxId: 177416]
 d4a26a2 :   (VAL128)  (GLY296)   [view usage] : c.2.1.0 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |automated matches |automated matches |Leishmania major [TaxId: 5664]
 d4b4ua2 :   (THR123)  (GLY282)   [view usage] : c.2.1.0 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |automated matches |automated matches |Acinetobacter baumannii [TaxId: 575584]
 d1b0aa1 :   (TYR126)  (PRO285)   [view usage] : c.2.1.7 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |Aminoacid dehydrogenase-like, C-terminal domain |Methylenetetrahydrofolate dehydrogenase/cyclohydrolase |Escherichia coli [TaxId: 562]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
   c.2